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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFEDPTVDKEVEIRKKVLK
IYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKENKDVIQKNKLKLTREQEELEEALEVERQENEQ
RRLFIQKEEQL

The query sequence (length=171) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7enc:0 306 171 1.0000 0.5588 1.0000 7.17e-123 1g25:A, 8gxq:HD, 8gxs:HD, 6nmi:H, 7nvw:3, 7nvx:3, 7nvy:3, 7nvz:3, 8wak:0, 8wal:0, 8wan:0, 8wao:0, 8wap:0, 8waq:0, 8war:0, 8was:0
2 7lbm:d 275 171 1.0000 0.6218 1.0000 7.63e-123 8byq:7
3 7egb:0 236 171 1.0000 0.7246 1.0000 1.40e-122 7egc:0
4 7nvr:3 214 151 0.8830 0.7056 1.0000 1.39e-108
5 6gym:3 138 133 0.3509 0.4348 0.4511 2.84e-34 8cen:3, 8ceo:3, 7ml0:3, 7ml1:3, 7ml2:3, 7ml3:3, 7o4i:3, 7o4j:3, 7o4k:3, 7o4l:3, 7o72:3, 7o73:3, 7o75:3, 5oqj:3, 5oqm:3, 7zs9:3, 7zsa:3, 7zsb:3
6 6yxe:A 89 75 0.1520 0.2921 0.3467 0.036 6yxe:B
7 2ecw:A 85 42 0.0819 0.1647 0.3333 0.086
8 7bbd:B 160 44 0.0760 0.0813 0.2955 0.48 8a58:C, 8a58:D, 8c07:I, 8f1f:C, 8f1f:c, 6fga:A, 6fga:B, 6fga:C, 6fga:D, 6fga:E, 6fga:F, 6fga:G, 6fga:H, 5m93:B, 5m93:C, 7nbb:C, 5o44:E, 6s53:B, 6s53:A, 6s53:H, 6s53:G, 3zlz:B
9 7xyz:B 456 45 0.0819 0.0307 0.3111 1.1 7xv2:A, 7xyy:A, 7xyy:B, 7xyz:A, 7xyz:C, 7xyz:D, 7xz0:A, 7xz0:B, 7xz1:A, 7xz1:B, 7xz2:A, 7xz2:B, 7xz2:C, 7xz2:D
10 6c9a:B 723 54 0.1053 0.0249 0.3333 1.7 6c9a:A
11 3fl2:A 116 35 0.0702 0.1034 0.3429 2.0
12 4v3p:Ll 94 45 0.0877 0.1596 0.3333 2.2 8ip8:UA, 8ipa:UA, 8ipb:UA, 8jiv:Cj, 4v7e:Cj
13 2egp:A 79 31 0.0643 0.1392 0.3548 2.3
14 6l8n:A 810 57 0.1053 0.0222 0.3158 2.6
15 7x1i:A 678 45 0.0936 0.0236 0.3556 2.7 7x1i:B, 7x1j:B, 7x1j:A
16 5olm:B 132 24 0.0526 0.0682 0.3750 3.0 5jpx:A, 5olm:A
17 2ecv:A 85 39 0.0643 0.1294 0.2821 3.0
18 8p5d:LJJ 89 83 0.1111 0.2135 0.2289 3.3 8p60:LJJ, 8p60:KJJ, 7qca:LJJ
19 8bal:F 348 34 0.0585 0.0287 0.2941 4.0 8bal:A, 8bal:C, 8bal:D, 8bal:E
20 2ecy:A 66 24 0.0585 0.1515 0.4167 4.3
21 2ysl:A 73 36 0.0760 0.1781 0.3611 4.9 2ysj:A
22 7oik:A 4426 28 0.0585 0.0023 0.3571 5.1 7oim:A, 6tax:A, 6tay:A
23 3pih:A 836 23 0.0643 0.0132 0.4783 5.4
24 4v6w:Cj 92 45 0.0819 0.1522 0.3111 5.4 6xu8:Cj
25 4s3o:C 95 28 0.0643 0.1158 0.3929 5.4 4s3o:F
26 6psm:C 448 51 0.0877 0.0335 0.2941 6.9 6prm:A, 6prm:B, 6prm:C, 6prm:D, 6psm:A, 6psm:B, 6psm:D, 6psm:E, 6psm:F, 6pso:B, 6pso:A
27 6stu:A 204 37 0.0760 0.0637 0.3514 7.9 8ofs:A, 8ofs:B, 8ofs:C
28 2ct2:A 88 48 0.0936 0.1818 0.3333 8.2 5fey:A, 5fey:B
29 8cwp:A 327 42 0.0819 0.0428 0.3333 8.6
30 6zu5:LO0 196 76 0.1462 0.1276 0.3289 9.5
31 7qe7:K 531 44 0.0702 0.0226 0.2727 9.6 5a31:J, 5a31:K, 5g04:J, 5g04:K, 5g05:J, 5g05:K, 9gaw:Q, 9gaw:K, 3hym:B, 3hym:D, 3hym:F, 3hym:H, 3hym:J, 3hym:L, 5lcw:J, 5lcw:K, 8pkp:Q, 8pkp:K, 6q6g:Q, 6q6g:K, 6q6h:Q, 6q6h:K, 7qe7:Q, 8s4g:Q, 8s4g:K, 6tlj:J, 6tlj:K, 6tm5:J, 6tm5:K, 6tnt:J, 6tnt:K, 4ui9:J, 4ui9:K
32 2pv3:A 284 49 0.0877 0.0528 0.3061 10.0 2pv1:A, 2pv2:A, 2pv2:B, 2pv2:C, 2pv2:D, 2pv3:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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