BioLiP

>protein
MDDKELIEYFKSQMKEDPDMASAVAAIRTLLEFLKRDKGIQGLRANLTSAIETLCGVDSSVAVSSGGELFLRFISLASLE
YSDYSKCKKIMIERGELFLRRISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGK
KMAKALCHLNVPVTVVLDAAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLN
QQDVPDKFKYKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLYLG

The query sequence (length=290) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Homologs to hit
1	3ecs:C	294	296	0.9862	0.9728	0.9662	0.0	3ecs:B, 3ecs:D, 3ecs:E, 3ecs:F, 3ecs:G, 3ecs:H, 7kma:A, 7kma:C, 7kma:D, 7kma:E, 7kma:F, 7kma:G, 7kma:H, 7kmf:H, 7kmf:G
2	7kma:B	268	289	0.9172	0.9925	0.9204	0.0
3	6o85:E	357	202	0.2172	0.1765	0.3119	2.93e-26
4	5yfj:A	322	240	0.2207	0.1988	0.2667	2.31e-25	5yfj:B, 5yfj:C, 5yfs:A, 5yfs:B, 5yfs:C, 5yft:A, 5yft:B, 5yft:C, 5yfu:A, 5yfu:B, 5yfu:C, 5yfv:A, 5yfv:B, 5yfv:C, 5yfw:A, 5yfw:B, 5yfw:C, 5yfx:A, 5yg5:A, 5yg5:B, 5yg5:C, 5yg6:A, 5yg6:C, 5yg6:B, 5yg7:A, 5yg7:C, 5yg7:B, 5yg8:A, 5yg8:B, 5yg8:C, 5yg9:A, 5yg9:B, 5yg9:C, 5yga:A, 5yga:B, 5yga:C
5	3a9c:B	325	214	0.2172	0.1938	0.2944	3.12e-25	3a9c:A, 3a9c:C, 3a9c:D, 3a9c:E, 3a9c:F, 3vm6:A, 3vm6:B, 3vm6:C
6	6caj:C	318	242	0.2483	0.2264	0.2975	2.89e-22	6caj:D, 6ezo:C, 6ezo:D, 7l7g:C, 7l7g:D, 6o81:C, 6o81:D, 6o85:C, 6o85:D
7	6jly:G	363	253	0.2310	0.1846	0.2648	2.03e-17
8	6jly:C	338	173	0.1828	0.1568	0.3064	5.63e-16	6jly:D, 6jlz:C, 6jlz:D
9	2yvk:A	349	269	0.2276	0.1891	0.2454	1.03e-09	2yrf:A, 2yrf:B, 2yvk:B, 2yvk:C, 2yvk:D
10	3fa3:B	302	54	0.0793	0.0762	0.4259	0.13	3fa3:A, 3fa3:C, 3fa3:D, 3fa3:E, 3fa3:F, 3fa3:G, 3fa3:H, 3fa3:I, 3fa3:J, 3fa3:K, 3fa3:L, 3fa3:M, 3fa3:N, 3fa3:O, 3fa3:P, 3fa4:A, 3fa4:B, 3fa4:C, 3fa4:D, 3fa4:E, 3fa4:F, 3fa4:G, 3fa4:H, 3fa4:I, 3fa4:J, 3fa4:K, 3fa4:L
11	1h31:A	261	126	0.0931	0.1034	0.2143	0.28	1h31:C, 1h31:E, 1h31:G, 1h32:A, 1h33:A, 2oz1:A, 2oz1:C, 2oz1:E, 2oz1:G
12	6pcm:A	793	33	0.0517	0.0189	0.4545	1.3	6pcm:B
13	2z09:A	124	97	0.1069	0.2500	0.3196	1.4	2z08:A
14	8il4:C	619	113	0.0931	0.0436	0.2389	1.6	8il4:A, 8il4:B, 8il4:D
15	5koi:A	271	39	0.0552	0.0590	0.4103	1.8	5koi:B, 5koi:C, 5koi:D, 5koi:E, 5koi:F, 5koi:G, 5koi:H
16	1rzl:A	91	46	0.0586	0.1868	0.3696	3.8	1uvc:A, 1uvc:B
17	8p82:A	1596	35	0.0414	0.0075	0.3429	4.9	8p82:B
18	8bh7:r	71	43	0.0414	0.1690	0.2791	7.6	7aso:9, 7asp:i, 7bgd:r, 8bh6:r, 8byv:r, 6fxc:Ar, 6fxc:Br, 7kwg:r, 5li0:r, 5nd8:r, 5nd9:r, 5ngm:Ar, 7nhl:s, 7nhm:s, 8p2f:s, 8p2g:s, 8p2h:s, 7p48:r, 6s0x:r, 6s13:r, 5t7v:S9, 5tcu:S9, 8y38:r, 8y39:r, 6yef:r
19	1v9n:A	348	27	0.0414	0.0345	0.4444	7.8

[Back]