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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MDDKELIEYFKSQMKEDPDMASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGVDSSVAVSSGGELFLRFISLSK
CKKIMIERGELFLRRISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKAL
CHLNVPVTVVLDAAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPD
KFKYKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLYLAA

The query sequence (length=285) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ecs:C 294 294 1.0000 0.9694 0.9694 0.0 3ecs:B, 3ecs:D, 3ecs:E, 3ecs:F, 3ecs:G, 3ecs:H, 7kma:A, 7kma:C, 7kma:D, 7kma:E, 7kma:F, 7kma:G, 7kma:H, 7kmf:H, 7kmf:G
2 7kma:B 268 283 0.9298 0.9888 0.9364 0.0
3 3a9c:B 325 228 0.2456 0.2154 0.3070 1.27e-26 3a9c:A, 3a9c:C, 3a9c:D, 3a9c:E, 3a9c:F, 3vm6:A, 3vm6:B, 3vm6:C
4 6o85:E 357 202 0.2211 0.1765 0.3119 2.78e-26
5 5yfj:A 322 220 0.2211 0.1957 0.2864 8.17e-26 5yfj:B, 5yfj:C, 5yfs:A, 5yfs:B, 5yfs:C, 5yft:A, 5yft:B, 5yft:C, 5yfu:A, 5yfu:B, 5yfu:C, 5yfv:A, 5yfv:B, 5yfv:C, 5yfw:A, 5yfw:B, 5yfw:C, 5yfx:A, 5yg5:A, 5yg5:B, 5yg5:C, 5yg6:A, 5yg6:C, 5yg6:B, 5yg7:A, 5yg7:C, 5yg7:B, 5yg8:A, 5yg8:B, 5yg8:C, 5yg9:A, 5yg9:B, 5yg9:C, 5yga:A, 5yga:B, 5yga:C
6 6caj:C 318 188 0.2175 0.1950 0.3298 4.55e-21 6caj:D, 6ezo:C, 6ezo:D, 7l7g:C, 7l7g:D, 6o81:C, 6o81:D, 6o85:C, 6o85:D
7 6jly:G 363 224 0.2105 0.1653 0.2679 1.22e-16
8 6jly:C 338 173 0.1860 0.1568 0.3064 5.02e-16 6jly:D, 6jlz:C, 6jlz:D
9 2yvk:A 349 149 0.1509 0.1232 0.2886 2.78e-09 2yrf:A, 2yrf:B, 2yvk:B, 2yvk:C, 2yvk:D
10 7mq8:LS 453 79 0.0772 0.0486 0.2785 0.68 7mq9:LS, 7mqa:LS
11 6pcm:A 793 32 0.0526 0.0189 0.4688 1.3 6pcm:B
12 2z09:A 124 97 0.1088 0.2500 0.3196 1.3 2z08:A
13 3fa3:B 302 56 0.0772 0.0728 0.3929 1.5 3fa3:A, 3fa3:C, 3fa3:D, 3fa3:E, 3fa3:F, 3fa3:G, 3fa3:H, 3fa3:I, 3fa3:J, 3fa3:K, 3fa3:L, 3fa3:M, 3fa3:N, 3fa3:O, 3fa3:P, 3fa4:A, 3fa4:B, 3fa4:C, 3fa4:D, 3fa4:E, 3fa4:F, 3fa4:G, 3fa4:H, 3fa4:I, 3fa4:J, 3fa4:K, 3fa4:L
14 3w1k:B 452 46 0.0561 0.0354 0.3478 1.9 3w1k:A, 3w1k:C, 3w1k:D, 3w1k:E
15 8p82:A 1596 35 0.0421 0.0075 0.3429 4.9 8p82:B
16 4ypt:A 378 80 0.0807 0.0608 0.2875 5.6 5wfi:A, 5wfi:B
17 1ogp:A 388 147 0.1263 0.0928 0.2449 7.4 1ogp:B, 1ogp:C, 1ogp:D, 1ogp:E, 1ogp:F
18 1v9n:A 348 27 0.0421 0.0345 0.4444 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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