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BioLiP
>protein
MDDKELIEYFKSQMKEDPDMASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGVDSSVAVSSGGELFLRFISKCK
KIMIERGELFLRRISLSRNKIADLCHTFIKDGATILTHAYSRVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCH
LNVPVTVVLDAAVGYIMEKADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLNQQDVPDKF
KYKALKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKLYLAAA

The query sequence (length=287) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ecs:C 294 294 0.9930 0.9694 0.9694 0.0 3ecs:B, 3ecs:D, 3ecs:E, 3ecs:F, 3ecs:G, 3ecs:H, 7kma:A, 7kma:C, 7kma:D, 7kma:E, 7kma:F, 7kma:G, 7kma:H, 7kmf:H, 7kmf:G
2 7kma:B 268 282 0.9303 0.9963 0.9468 0.0
3 3a9c:B 325 226 0.2439 0.2154 0.3097 3.43e-27 3a9c:A, 3a9c:C, 3a9c:D, 3a9c:E, 3a9c:F, 3vm6:A, 3vm6:B, 3vm6:C
4 6o85:E 357 204 0.2195 0.1765 0.3088 3.60e-26
5 5yfj:A 322 218 0.2230 0.1988 0.2936 3.35e-25 5yfj:B, 5yfj:C, 5yfs:A, 5yfs:B, 5yfs:C, 5yft:A, 5yft:B, 5yft:C, 5yfu:A, 5yfu:B, 5yfu:C, 5yfv:A, 5yfv:B, 5yfv:C, 5yfw:A, 5yfw:B, 5yfw:C, 5yfx:A, 5yg5:A, 5yg5:B, 5yg5:C, 5yg6:A, 5yg6:C, 5yg6:B, 5yg7:A, 5yg7:C, 5yg7:B, 5yg8:A, 5yg8:B, 5yg8:C, 5yg9:A, 5yg9:B, 5yg9:C, 5yga:A, 5yga:B, 5yga:C
6 6caj:C 318 188 0.2056 0.1855 0.3138 1.17e-19 6caj:D, 6ezo:C, 6ezo:D, 7l7g:C, 7l7g:D, 6o81:C, 6o81:D, 6o85:C, 6o85:D
7 6jly:G 363 227 0.2091 0.1653 0.2643 6.82e-17
8 6jly:C 338 173 0.1882 0.1598 0.3121 1.64e-15 6jly:D, 6jlz:C, 6jlz:D
9 2yvk:A 349 148 0.1463 0.1203 0.2838 1.03e-09 2yrf:A, 2yrf:B, 2yvk:B, 2yvk:C, 2yvk:D
10 2z09:A 124 97 0.1080 0.2500 0.3196 1.3 2z08:A
11 3fa3:B 302 56 0.0767 0.0728 0.3929 1.7 3fa3:A, 3fa3:C, 3fa3:D, 3fa3:E, 3fa3:F, 3fa3:G, 3fa3:H, 3fa3:I, 3fa3:J, 3fa3:K, 3fa3:L, 3fa3:M, 3fa3:N, 3fa3:O, 3fa3:P, 3fa4:A, 3fa4:B, 3fa4:C, 3fa4:D, 3fa4:E, 3fa4:F, 3fa4:G, 3fa4:H, 3fa4:I, 3fa4:J, 3fa4:K, 3fa4:L
12 4w5k:A 380 44 0.0523 0.0395 0.3409 2.3 4w5k:B
13 6pcm:A 793 35 0.0523 0.0189 0.4286 3.0 6pcm:B
14 8p82:A 1596 35 0.0418 0.0075 0.3429 4.8 8p82:B
15 1xdi:A 459 154 0.1394 0.0871 0.2597 5.7 1xdi:B
16 5f3y:A 549 46 0.0488 0.0255 0.3043 6.5
17 1v9n:A 348 27 0.0418 0.0345 0.4444 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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