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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MDAVCAKVDAANRLGDPLEAFPVFKKYDRNGLNVSIECKRVSGLEPATVDWAFDLTKTNMQTMYEQSEWGWKDREKREEM
TDDRAWYLIAWENSSVPVAFSHFRFDVECGDEVLYCYEVQLESKVRRKGLGKFLIQILQLMANSTQMKKVMLTVFKHNHG
AYQFFREALQFEIDDSSPSMCSYEILSRRTKF

The query sequence (length=192) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7kd7:A 204 199 1.0000 0.9412 0.9648 1.30e-143 7kd7:D, 7kpu:D, 7kpu:A, 4u9v:B, 4u9w:B, 4u9w:A, 4u9w:C, 4u9w:D
2 4ua3:B 193 147 0.2604 0.2591 0.3401 1.76e-21 4ua3:A
3 3ld2:B 162 61 0.0938 0.1111 0.2951 0.20 3ld2:A, 3ld2:C, 3ld2:D
4 6azq:G 226 58 0.0729 0.0619 0.2414 2.2 6azq:H, 6azq:A, 6azq:B, 6azq:C, 6azq:D, 6azq:E, 6azs:B, 6azs:D
5 6ogz:A 1082 75 0.0885 0.0157 0.2267 2.3 6ogy:A, 6oj6:P, 2r7r:A, 2r7s:A, 2r7t:A, 2r7u:A, 2r7v:A, 2r7w:A, 2r7x:A, 2r7x:B
6 2z86:C 603 76 0.0990 0.0315 0.2500 2.4 2z86:A, 2z86:B, 2z86:D, 2z87:A, 2z87:B
7 6bvc:A 154 72 0.0833 0.1039 0.2222 3.4 1bo4:A, 1bo4:B
8 5ebz:A 655 56 0.0729 0.0214 0.2500 3.6 5ebz:B, 5ebz:C, 5ebz:D, 5ebz:E, 5ebz:F, 5ebz:G, 5ebz:H, 5ebz:L, 5ebz:I, 5ebz:K, 5ebz:J
9 7m7f:A 1390 30 0.0729 0.0101 0.4667 4.9 2fr0:A, 2fr1:A, 7m7i:A
10 7cgv:A 310 18 0.0521 0.0323 0.5556 6.3 7cgv:B, 7cgv:C, 7cgv:D
11 1tiq:A 173 59 0.0833 0.0925 0.2712 6.6 1tiq:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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