Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MDAKARNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGY
KDLAALLHDGIP

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5juy:B 1234 92 1.0000 0.0746 1.0000 4.48e-58 1cy5:A, 3j2t:A, 3j2t:B, 3j2t:C, 3j2t:D, 3j2t:E, 3j2t:F, 3j2t:G, 3jbt:A, 3jbt:C, 3jbt:E, 3jbt:G, 3jbt:I, 3jbt:K, 3jbt:M, 5juy:A, 5juy:C, 5juy:D, 5juy:E, 5juy:F, 5juy:G, 2p1h:A, 5wve:A, 5wve:C, 5wve:E, 5wve:G, 5wve:I, 5wve:K, 5wve:M, 1z6t:A, 1z6t:B, 1z6t:C, 1z6t:D
2 4ikm:A 463 52 0.1630 0.0324 0.2885 0.93
3 2uw1:B 338 44 0.1739 0.0473 0.3636 1.2 2uw1:A
4 1aih:C 168 73 0.2500 0.1369 0.3151 4.2
5 5awp:A 596 31 0.1196 0.0185 0.3548 4.3 5awq:A
6 3kst:A 291 28 0.1630 0.0515 0.5357 4.6 3kst:B
7 6ke6:RP 2052 63 0.1630 0.0073 0.2381 5.2
8 7d4i:RP 2084 63 0.1630 0.0072 0.2381 5.5 7d5t:RP
9 6lqs:RP 2180 63 0.1630 0.0069 0.2381 5.7 7d63:RP, 6lqp:RP, 6lqq:RP, 6lqr:RP, 6lqt:RP, 6lqu:RP, 6lqv:RP
10 7suk:SP 2234 63 0.1630 0.0067 0.2381 5.7 6zqb:UT
11 6oyt:D 253 87 0.2826 0.1028 0.2989 5.8 6e2m:B, 6e2n:B, 6oyt:B, 6oyt:C, 5uor:A, 5up3:B, 5v24:A, 6xih:B
12 7aju:UT 2313 63 0.1630 0.0065 0.2381 6.1 7ajt:UT, 6zqc:UT, 6zqd:UT, 6zqe:UT
13 5vil:A 271 82 0.2826 0.0959 0.3171 7.5 4bf2:A, 4bf2:B, 4bhn:A, 4bhn:B, 4bib:A, 4bib:B, 4bic:A, 4bic:B, 4bid:A, 4bid:B, 4bie:A, 4bie:B, 2clq:A, 2clq:B, 6e2m:A, 6e2n:A, 6e2o:A, 6e2o:B, 7mu6:A, 7mu6:B, 7mu7:A, 7mu7:B, 6oyw:A, 6oyw:B, 6oyw:C, 6oyw:D, 5uor:B, 5uox:A, 5uox:B, 5up3:A, 5v19:A, 5v19:B, 5v24:B, 5vil:B, 5vil:C, 5vil:D, 5vio:A, 5vio:B, 5vio:D, 6vre:A, 6vre:B, 3vw6:A, 3vw6:B, 6xih:A
14 7jil:W 75 24 0.1196 0.1467 0.4583 8.2
15 6oyt:A 222 82 0.2826 0.1171 0.3171 8.2
16 6heg:A 783 42 0.1413 0.0166 0.3095 8.5
17 2vz9:B 2086 13 0.0978 0.0043 0.6923 9.2 2vz9:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218