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BioLiP
>protein
MAWNNIVFYSLGDVNSYQGGNVVITQRPQFITSWRPGIATVTWNQCNGPEFADGSWAYYREYIAWVVFPKKVMTKNGYPL
FIEVHNKGSWSEENTGDNDSYFFLKGYKWDQRAFDTANLCQKPGETTRLTEKFDDIIFKVALPADLPLGDYSVTIPYTSG
IQRHFASYLGARFKIPYNVAKTLPRENEMLFLFKNIG

The query sequence (length=197) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4z3g:A 198 197 1.0000 0.9949 1.0000 2.48e-149 1j8r:A, 4z3e:A, 4z3f:A, 4z3g:B, 4z3h:A
2 1su3:B 416 73 0.1117 0.0529 0.3014 0.43 966c:A, 4auo:A, 4auo:B, 1ayk:A, 2ayk:A, 3ayk:A, 4ayk:A, 1cge:A, 1cgf:A, 1cgf:B, 1cgl:A, 1cgl:B, 2clt:A, 2clt:B, 1hfc:A, 2j0t:A, 2j0t:B, 2j0t:C, 3shi:A, 3shi:G, 3shi:M, 1su3:A, 2tcl:A
3 5dg2:B 131 69 0.1168 0.1756 0.3333 0.87 5dg1:C, 5dg1:H, 5dg1:D, 5dg1:I, 5ews:C, 5ews:D, 5ews:A, 5ews:G, 5ews:H, 5ews:I, 5ews:J, 5ews:K, 5ews:M, 5ews:N, 1hlc:A, 1hlc:B
4 6nbk:A 289 48 0.0812 0.0554 0.3333 3.3 6nbk:B, 6nbk:C, 6nbk:D, 6nbk:E, 6nbk:F
5 2rem:C 191 60 0.0914 0.0942 0.3000 3.9
6 4pl6:A 57 16 0.0406 0.1404 0.5000 7.1 4pl6:B, 4pli:A, 4pli:B, 4pll:A, 4pll:B
7 1uf2:A 967 25 0.0508 0.0103 0.4000 8.0
8 3s3s:A 620 115 0.1168 0.0371 0.2000 8.1 3s3p:A
9 8wch:A 396 74 0.1015 0.0505 0.2703 9.8 8wch:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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