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BioLiP
>protein
MAWLILIIAGIFEVVWAIALKYSNGFTRLIPSMITLIGMLISFYLLSQATKTLPIGTAYAIWTGIGALGAVICGIIFFKE
PLTALRIVFMILLLTGIIGLKATS

The query sequence (length=104) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7szt:A 104 104 1.0000 1.0000 1.0000 1.97e-67 8tgy:A, 8tgy:E, 8vxu:A, 8vxu:B, 8vxu:C, 8vxu:D, 6wk8:B, 6wk8:A, 6wk9:B, 6wk9:A, 6wk9:F, 6wk9:E
2 8uoz:A 110 86 0.3269 0.3091 0.3953 1.54e-12 7jk8:A, 7jk8:B, 7mgx:A, 7mgx:B, 7mgx:E, 7mgx:F, 7sfq:A, 7sfq:B, 7ssu:A, 7ssu:B, 7sv9:B, 7sv9:A, 7svx:B, 8uoz:B
3 5u34:A 960 22 0.1154 0.0125 0.5455 4.4
4 5wqe:A 1011 22 0.1154 0.0119 0.5455 4.4
5 5u30:A 1085 22 0.1154 0.0111 0.5455 4.5 5u31:A, 5u33:A
6 8zpt:R 292 43 0.1250 0.0445 0.3023 8.2 8zps:R

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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