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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MAVTEASLLRQCPLLLPQNRSKTVYEGFISAQGRDFHLRIVLPEDLQLKNARLLCSWQLRTILSGYHRIVQQRMQHSPDL
MSFMMELKMLLEVALKNRQELYALPPPPQFYSSLIEEIGTLGWDKLVYADTCFSTIKLKAEDASGREHLITLKLKAKYPA
ESPDYFVDFPVPFCASWTPQSSLISIYSQFLAAIESLKAFWDVMDEIDEKTWVLEPEKPPRSATARRIALGNNVSINIEV
DPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVLEIDFPARAILEKSDFTMDCGICYAYQLDGTIP
DQVCDNSQCGQPFHQICLYEWLRGLLTSRQSFNIIFGECPYCSKPITLKM

The query sequence (length=370) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7kzp:L 370 370 1.0000 1.0000 1.0000 0.0 4ccg:X, 4ccg:Y, 7kzq:L, 7kzq:M, 7kzr:L, 7kzr:M, 7kzs:L, 7kzs:M, 7kzt:L, 7kzt:M, 7kzv:L, 7kzv:M, 3zqs:A
2 3k1l:A 376 216 0.1568 0.1543 0.2685 5.83e-18 3k1l:B
3 8aaf:e 1527 83 0.0757 0.0183 0.3373 0.002 8agt:e, 8agu:e, 8agv:e, 8agw:e, 8agx:e, 8agz:e
4 6l8n:A 810 100 0.0730 0.0333 0.2700 0.11
5 8a3t:U 114 70 0.0622 0.2018 0.3286 0.40 8a5y:U
6 2lxh:C 58 53 0.0514 0.3276 0.3585 0.83 2lxp:C
7 8cg6:C 75 27 0.0297 0.1467 0.4074 2.9
8 6sei:A 276 57 0.0432 0.0580 0.2807 5.0 6sei:C
9 5dbh:X 312 34 0.0270 0.0321 0.2941 5.3 6aif:A, 5dbe:X, 7djq:A, 3iqg:X, 3iqh:X, 3iqi:X, 4li3:X, 4nu8:X, 4ore:X, 1y7l:A, 7yod:A, 7yoh:A, 7yoi:A, 7yol:A, 7yom:A, 4zu1:X, 4zu6:X
10 2bmo:A 437 32 0.0324 0.0275 0.3750 6.0 2bmq:A, 2bmr:A
11 7cq3:A 298 97 0.0676 0.0839 0.2577 6.0 7cq2:B, 7cq4:A
12 3j92:0 36 43 0.0378 0.3889 0.3256 6.4
13 4lad:B 69 38 0.0378 0.2029 0.3684 6.6
14 7cq2:A 274 66 0.0514 0.0693 0.2879 7.6
15 6hdp:A 409 65 0.0459 0.0416 0.2615 8.0 7akf:A, 7akh:A, 4azf:A, 7dg4:A, 7dh3:A, 7dh9:A, 7dhc:A, 7dhh:A, 7dhk:A, 7dhn:A, 7dho:A, 7dhv:A, 7djo:A, 7dl6:A, 7ejv:A, 7ejv:B, 6hdr:A, 8hlt:A, 8hlt:B, 6k0j:A, 3kvw:A, 5lxc:A, 5lxc:B, 5lxd:A, 5lxd:B, 5ztn:A, 5ztn:B
16 2cxn:A 557 72 0.0541 0.0359 0.2778 9.5 2cxo:A, 2cxo:B, 2cxp:A, 2cxp:B, 2cxq:A, 2cxq:B, 2cxr:A, 2cxr:B, 2cxs:A, 2cxs:B, 2cxt:A, 2cxt:B, 2cxu:A, 1u0f:A, 1u0g:A, 1u0g:B
17 2y43:A 88 51 0.0378 0.1591 0.2745 9.8 2y43:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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