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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MAVFHDEVEIEDFQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVIYDKDQFVSGETVPAPSANKELV
KLEH

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2jr7:A 84 84 1.0000 1.0000 1.0000 2.67e-58
2 1wge:A 83 76 0.8214 0.8313 0.9079 1.01e-47
3 4d4o:A 414 60 0.3571 0.0725 0.5000 7.16e-19 4d4o:C, 4d4p:A, 4d4p:C, 4d4p:G, 4d4p:H, 4x33:A, 4x33:B, 1yop:A, 1yws:A
4 5a9z:AV 110 28 0.1310 0.1000 0.3929 0.31 5aa0:AV, 7azo:L24A, 7azo:L24B, 7azs:L24A, 7azs:L24B, 9b00:1Y, 9b00:2Y, 6b4v:V, 6b4v:ZB, 6boh:V, 6boh:AC, 6bok:V, 6bok:YB, 6buw:RY, 6buw:YY, 6bz6:RY, 6bz6:YY, 6bz7:RY, 6bz7:YY, 6bz8:RY, 6bz8:YY, 6c5l:BY, 6c5l:DY, 6cae:1Y, 6cae:2Y, 6cfj:1Y, 6cfj:2Y, 6cfk:1Y, 6cfk:2Y, 6cfl:1Y, 6cfl:2Y, 8cvj:1Y, 8cvj:2Y, 8cvk:1Y, 8cvk:2Y, 8cvl:1Y, 8cvl:2Y, 5czp:YY, 5czp:RY, 6czr:1Y, 6czr:2Y, 5d8b:S, 5d8b:OB, 5dfe:YY, 5dfe:RY, 5dox:1Y, 5dox:2Y, 5doy:1Y, 5doy:2Y, 5e7k:G8, 5e7k:C5, 5e81:G8, 5e81:C5, 8ekb:1Y, 8ekb:2Y, 5el4:G8, 5el4:C5, 5el5:G8, 5el5:C5, 5el6:G8, 5el6:C5, 5el7:G8, 5el7:C5, 8ev6:1Y, 8ev6:2Y, 8ev7:1Y, 8ev7:2Y, 5f8k:1Y, 5f8k:2Y, 8fc1:1Y, 8fc1:2Y, 8fc2:1Y, 8fc2:2Y, 8fc3:1Y, 8fc3:2Y, 8fc4:1Y, 8fc4:2Y, 8fc5:1Y, 8fc5:2Y, 8fc6:1Y, 8fc6:2Y, 5fdu:1Y, 5fdu:2Y, 5fdv:1Y, 5fdv:2Y, 6fkr:1Y, 6fkr:2Y, 8fom:RY, 8fom:YY, 8fon:RY, 8fon:YY, 8g29:1Y, 8g29:2Y, 8g2a:1Y, 8g2a:2Y, 8g2b:1Y, 8g2b:2Y, 8g2c:1Y, 8g2c:2Y, 8g2d:1Y, 8g2d:2Y, 6gsj:G8, 6gsk:G8, 6gsl:G8, 6gsl:C5, 6gzq:T1, 6gzx:T1, 6gzx:T2, 6gzz:T1, 6gzz:T2, 5hau:1W, 5hau:2W, 5hcp:1Y, 5hcp:2Y, 5hcq:1Y, 5hcq:2Y, 5hcr:1Y, 5hcr:2Y, 5hd1:1Y, 5hd1:2Y, 5ib7:G8, 5ib7:C5, 5ib8:G8, 5ib8:C5, 5ibb:G8, 5ibb:C5, 5imq:q, 5imr:q, 5j30:RY, 5j30:YY, 5j3c:RY, 5j3c:YY, 5j4b:1Y, 5j4b:2Y, 5j4c:1Y, 5j4c:2Y, 5j4d:V, 5j4d:AC, 5j8b:Y, 7jql:1Y, 7jql:2Y, 7jqm:1Y, 7jqm:2Y, 4l47:RY, 4l47:YY, 4l71:RY, 4l71:YY, 4lel:RY, 4lel:YY, 4lfz:RY, 4lfz:YY, 7lh5:BY, 7lh5:DY, 4lnt:RY, 4lnt:YY, 4lsk:RY, 4lsk:YY, 4lt8:RY, 4lt8:YY, 7md7:1Y, 7md7:2Y, 6n1d:AL24, 6n1d:BL24, 6n9e:1Y, 6n9e:2Y, 6n9f:1Y, 6n9f:2Y, 5ndj:G8, 5ndj:C5, 5ndk:G8, 5ndk:C5, 6nd5:1Y, 6nd5:2Y, 6nd6:1Y, 6nd6:2Y, 6ndk:RY, 6ndk:YY, 6nsh:RY, 6nsh:YY, 6nta:RY, 6nta:YY, 6nuo:RY, 6nuo:YY, 6nwy:RY, 6nwy:YY, 6o3m:RY, 6o3m:YY, 6o97:1Y, 6o97:2Y, 6of1:1Y, 6of1:2Y, 6of6:RY, 6of6:YY, 6oj2:RY, 6oj2:YY, 6ope:RY, 6ope:YY, 6ord:RY, 6ord:YY, 6osi:RY, 6osi:YY, 5ot7:z, 6otr:RY, 6otr:YY, 6oxa:RY, 6oxa:YY, 6oxi:RY, 6oxi:YY, 4p6f:RY, 4p6f:YY, 4p70:RY, 4p70:YY, 6q95:U, 6qnq:G8, 6qnq:C5, 6qnr:G8, 6qnr:C5, 7rq8:1Y, 7rq8:2Y, 7rq9:1Y, 7rq9:2Y, 7rqa:1Y, 7rqa:2Y, 7rqb:1Y, 7rqb:2Y, 7rqc:1Y, 7rqc:2Y, 7rqd:1Y, 7rqd:2Y, 7rqe:1Y, 7rqe:2Y, 8t8b:1Y, 8t8b:2Y, 8t8c:1Y, 8t8c:2Y, 4tua:RY, 4tua:YY, 4tub:RY, 4tub:YY, 4tuc:RY, 4tuc:YY, 4tud:RY, 4tud:YY, 4tue:RY, 4tue:YY, 7u2h:1Y, 7u2h:2Y, 7u2i:1Y, 7u2i:2Y, 7u2j:1Y, 7u2j:2Y, 6ucq:1Y, 6ucq:2Y, 8ud6:1Y, 8ud6:2Y, 8ud7:1Y, 8ud7:2Y, 8ud8:1Y, 8ud8:2Y, 6uo1:1Y, 6uo1:2Y, 5uq7:Y, 5uq8:Y, 8uvr:1Y, 8uvr:2Y, 8uvs:1Y, 8uvs:2Y, 4v4i:S, 4v4j:S, 4v4x:BX, 4v4y:BX, 4v4z:BX, 4v51:BY, 4v51:DY, 4v5a:BY, 4v5a:DY, 4v5c:BY, 4v5c:DY, 4v5d:BY, 4v5d:DY, 4v5e:BY, 4v5e:DY, 4v5f:BY, 4v5f:DY, 4v5g:BY, 4v5g:DY, 4v5j:BY, 4v5j:DY, 4v5k:BY, 4v5k:DY, 4v5l:BY, 4v5m:BY, 4v5n:BY, 4v5p:BY, 4v5p:DY, 4v5q:BY, 4v5q:DY, 4v5r:BY, 4v5r:DY, 4v5s:BY, 4v5s:DY, 4v63:BY, 4v63:DY, 4v67:BY, 4v67:DY, 4v68:BY, 4v6a:BY, 4v6a:DY, 4v6f:AU, 4v6f:DU, 4v6g:BU, 4v6g:DU, 4v7j:AY, 4v7j:BY, 4v7k:AY, 4v7k:BY, 4v7l:BY, 4v7l:DY, 4v7m:DY, 4v7p:BU, 4v7p:CU, 4v7w:BY, 4v7w:DY, 4v7x:BY, 4v7x:DY, 4v7y:BY, 4v7y:DY, 4v7z:BY, 4v7z:DY, 4v83:BU, 4v83:DU, 4v84:BU, 4v84:DU, 4v87:AU, 4v87:DU, 4v8a:AY, 4v8a:BY, 4v8b:BU, 4v8b:DU, 4v8c:AU, 4v8c:BU, 4v8d:BU, 4v8d:DU, 4v8e:AU, 4v8e:CU, 4v8f:AU, 4v8f:DU, 4v8g:BY, 4v8g:DY, 4v8h:BY, 4v8h:DY, 4v8i:BY, 4v8i:DY, 4v8j:BY, 4v8j:DY, 4v8n:BY, 4v8n:DY, 4v8o:BY, 4v8q:AY, 4v8u:BY, 4v8u:DY, 4v8x:BY, 4v8x:DY, 5v8i:1Y, 5v8i:2Y, 4v90:BY, 4v95:BY, 4v95:DY, 4v97:BY, 4v97:DY, 4v9a:BU, 4v9a:DU, 4v9b:BU, 4v9b:DU, 4v9h:BY, 4v9i:BY, 4v9i:DY, 4v9j:BY, 4v9j:DY, 4v9k:BY, 4v9k:DY, 4v9l:BY, 4v9l:DY, 4v9m:BY, 4v9m:DY, 4v9n:BY, 4v9n:DY, 4v9q:AU, 4v9q:CU, 4v9r:BY, 4v9r:DY, 4v9s:BY, 4v9s:DY, 5vp2:1Y, 5vp2:2Y, 5vpo:RY, 5vpo:YY, 5vpp:RY, 5vpp:YY, 8vtu:1Y, 8vtu:2Y, 8vtv:1Y, 8vtv:2Y, 8vtw:1Y, 8vtw:2Y, 8vtx:1Y, 8vtx:2Y, 8vty:1Y, 8vty:2Y, 1vvj:RY, 1vvj:YY, 1vy4:BY, 1vy4:DY, 1vy5:BY, 1vy5:DY, 1vy6:BY, 1vy6:DY, 1vy7:BY, 1vy7:DY, 4w29:BY, 4w29:DY, 4w2e:Y, 4w2f:BY, 4w2f:DY, 4w2g:BY, 4w2g:DY, 4w2h:BY, 4w2h:DY, 4w2i:BY, 4w2i:DY, 4w4g:RY, 4w4g:YY, 5w4k:1Y, 5w4k:2Y, 5wis:1Y, 5wis:2Y, 5wit:1Y, 5wit:2Y, 4wpo:AY, 4wpo:CY, 4wq1:G8, 4wq1:C5, 4wqf:AY, 4wqf:CY, 4wqr:G8, 4wqr:C5, 4wqu:AY, 4wqu:CY, 4wqy:AY, 4wqy:CY, 4wr6:G8, 4wr6:C5, 4wra:G8, 4wra:C5, 4wro:G8, 4wsd:G8, 4wsd:C5, 4wsm:G8, 4wsm:C5, 4wt1:G8, 4wt1:C5, 4wt8:CY, 4wt8:DY, 4wu1:G8, 4wu1:C5, 4wzd:G8, 4wzd:C5, 4wzo:G8, 4wzo:C5, 4xej:AL24, 4xej:BL24, 6xhv:1Y, 6xhv:2Y, 6xhw:1Y, 6xhw:2Y, 6xhx:1Y, 6xhx:2Y, 6xhy:1Y, 6xhy:2Y, 6xqd:1Y, 6xqd:2Y, 6xqe:1Y, 6xqe:2Y, 4y4o:1Y, 4y4o:2Y, 4y4p:1Y, 4y4p:2Y, 4ypb:RY, 4ypb:YY, 4yzv:RY, 4yzv:YY, 4z3s:1Y, 4z3s:2Y, 4z8c:1Y, 4z8c:2Y, 4zer:1Y, 4zer:2Y, 5zlu:r, 4zsn:RY, 4zsn:YY
5 7ane:aa 1514 52 0.2381 0.0132 0.3846 0.82
6 2bwa:A 226 20 0.1190 0.0442 0.5000 1.3 2bwa:B, 2bwc:A, 2bwc:B, 1h0b:A, 1h0b:B
7 4v7m:BY 87 24 0.1190 0.1149 0.4167 2.4
8 8og1:A 715 29 0.1548 0.0182 0.4483 2.5 7aua:A, 7aua:B, 8og4:B, 8og4:A
9 7mi4:A 554 32 0.1548 0.0235 0.4062 3.4 7mi4:B, 7mi4:C, 7mi4:D, 7mi5:A, 7mi5:B, 7mi5:D, 7mi5:C, 7mi9:A, 7mi9:B, 7mi9:C, 7mi9:D, 7mib:A, 7mib:B, 7mib:C, 7mib:D, 7mid:A, 7mid:B
10 4zel:A 550 41 0.1905 0.0291 0.3902 4.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218