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BioLiP
>protein
MATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKRPG
TFYFLCGIPGHCQLGQKVEIKVDPG

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ws7:A 107 105 1.0000 0.9813 1.0000 3.45e-77 1ws7:B, 1ws7:C, 1ws7:D, 1ws8:A, 1ws8:B, 1ws8:C, 1ws8:D
2 2cbp:A 96 98 0.4190 0.4583 0.4490 1.34e-24
3 1jer:A 110 104 0.3905 0.3727 0.3942 2.17e-17
4 1f56:A 91 76 0.3048 0.3516 0.4211 2.82e-15 1f56:B, 1f56:C
5 1x9r:A 105 85 0.2762 0.2762 0.3412 7.39e-15 1x9r:B, 1x9u:A, 1x9u:B
6 1ov8:A 139 36 0.1238 0.0935 0.3611 0.076 1ov8:B, 1ov8:C, 1ov8:D, 1qhq:A
7 2dv6:A 422 78 0.2476 0.0616 0.3333 0.15 2dv6:B, 2dv6:C, 2dv6:D, 2dv6:E, 2dv6:F
8 6tfo:C 424 78 0.2286 0.0566 0.3077 0.17 6tfd:A, 6tfd:C, 6tfd:B, 6tfo:A, 6tfo:B
9 7k5b:B 4524 52 0.1524 0.0035 0.3077 0.40 8bx8:B, 7k58:B, 7kek:B
10 1cur:A 155 23 0.1048 0.0710 0.4783 0.88 1a3z:A, 1a8z:A, 2cak:A, 2cal:A, 1e30:A, 1e30:B, 1gy1:A, 1gy1:B, 1gy2:A, 1gy2:B, 1rcy:A
11 6mdm:D 713 46 0.1429 0.0210 0.3261 1.2 1d2n:A, 6ip2:B, 6ip2:C, 6ip2:D, 6ip2:E, 6ip2:F, 6ip2:A, 6mdm:A, 6mdm:B, 6mdm:C, 6mdm:E, 6mdn:A, 6mdn:B, 6mdn:C, 6mdn:D, 6mdn:E, 6mdo:A, 6mdo:B, 6mdo:C, 6mdo:D, 6mdo:E, 6mdo:F, 6mdp:A, 6mdp:B, 6mdp:C, 6mdp:D, 6mdp:E, 6mdp:F, 1nsf:A
12 6kol:A 125 26 0.1143 0.0960 0.4615 1.3 6l9s:A
13 7kyd:A 534 80 0.2571 0.0506 0.3375 2.5
14 8isz:A 465 37 0.1143 0.0258 0.3243 2.6 8it0:A, 8it0:E, 8it1:I, 8it1:M, 8it1:A, 8it1:E, 8j8h:A, 8j9g:A, 8j9p:A, 8j9p:C, 8jay:A, 8jay:C, 8jay:I, 8jay:M, 8k9g:A, 8k9g:E, 8u72:C, 8u72:E, 8u72:I, 8u72:G
15 4jlw:A 395 29 0.0857 0.0228 0.3103 3.2 4jlw:B, 4jlw:C, 4jlw:D
16 1kol:A 396 29 0.0857 0.0227 0.3103 6.0 1kol:B
17 7y4l:WA 139 68 0.1905 0.1439 0.2941 6.4 7ezx:D5, 7ezx:D8, 7liy:A, 7y4l:cA, 7y5e:WB, 7y5e:cB, 7y7a:WA, 7y7a:cA, 7y7a:WW, 7y7a:cW
18 8khw:A 582 54 0.1810 0.0326 0.3519 6.7
19 8khv:A 579 36 0.0952 0.0173 0.2778 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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