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BioLiP
>protein
MATPSLRGRLARLGNPRKPILKPNKPLILANHVGERRREKGEATCITEMSIMMACWKQNEFRDEACKKEIRDFFDCASRA
EAARKMRSIQEDLGELGSLPPRKLNKLLQRFPNKPHLS

The query sequence (length=118) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3jd5:m 118 118 1.0000 1.0000 1.0000 2.20e-84 5aj3:m, 5aj4:Am, 6gaw:Am, 6gaz:Am, 6neq:m, 6nf8:m, 7nqh:Am, 7nql:Am, 7nsi:Am, 7nsj:Am, 8oin:Ac, 8oip:Ac, 6ydp:Am, 6ydw:Am
2 7pnw:2 117 116 0.8136 0.8205 0.8276 3.61e-68
3 8any:A2 117 117 0.8475 0.8547 0.8547 5.75e-65 7a5f:c6, 7a5g:c6, 7a5i:c6, 7a5k:c6, 3j9m:A2, 8k2a:Sm, 7l08:A2, 6nu2:A2, 6nu3:A2, 7og4:A2, 8oir:Ac, 8ois:Ac, 7p2e:2, 7po1:2, 7po2:2, 7po3:2, 7qi4:A2, 7qi5:A2, 7qi6:A2, 8qrm:2, 8qrn:2, 6rw4:2, 6rw5:2, 6vlz:A2, 6vmi:A2, 8xt0:Sm, 8xt2:Sm, 6zm5:A2, 6zm6:A2, 6zs9:A2, 6zsa:A2, 6zsb:A2, 6zsc:A2, 6zsd:A2, 6zse:A2, 6zsg:A2
4 6yw5:11 88 47 0.1356 0.1818 0.3404 0.21 6ywe:11, 6ywx:11, 6ywy:11
5 8p5r:C 1109 37 0.1271 0.0135 0.4054 0.37 6i2q:A, 6i2r:A, 6i2r:C, 6i2s:A, 8p5r:A, 8p5r:B, 8p5r:D, 8p5r:E, 8p5r:F, 6r2b:A, 6r2b:D, 6r2c:A, 6r2c:B, 6r2c:C, 6r2c:D, 6r2d:A, 6r2d:B, 6r2d:C, 6r2d:D, 2xt6:A, 2xt6:B, 2xta:A, 2xta:B, 2xta:C, 2xta:D, 2y0p:D, 2yic:A, 2yic:B, 2yic:C, 2yic:D, 2yid:A, 2yid:B, 2yid:C, 2yid:D, 3zhq:A, 3zhq:B, 3zhq:C, 3zhq:D, 3zhr:A, 3zhr:B, 3zhr:C, 3zhr:D, 3zhs:A, 3zhs:B, 3zhs:C, 3zhs:D, 3zht:A, 3zht:B, 3zht:C, 3zht:D, 3zhu:A, 3zhu:B, 3zhu:C, 3zhu:D, 3zhv:A, 3zhv:B, 3zhv:C, 3zhv:D
6 2y0p:C 856 37 0.1271 0.0175 0.4054 0.45 6r29:A, 6r29:B, 6r2a:A, 6r2a:B, 6r2b:B, 6r2b:C, 2y0p:A, 2y0p:B
7 8yla:A 328 53 0.1610 0.0579 0.3585 0.50 8yla:B
8 8om2:Z 92 101 0.1864 0.2391 0.2178 0.83 8d8k:Z, 8d8l:Z, 5mrc:ZZ, 5mre:ZZ, 5mrf:ZZ, 8om3:Z, 8om4:Z
9 6wb6:A 653 105 0.2034 0.0368 0.2286 8.8 6wb6:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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