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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MATLLEKTRQVNELLQKQAELPYNKMAMILGDILESNAYIISSSGDLLGYTEKLDVNNARIKNMFKEKKFPQGYTEAVDM
LKVTEANIPIDSDLTAFPFESRELYPFGLTTIVPLYGAGKRLGTIILARVEKSFNEDDLVLAEYSATVVGMQILYHQSRT
IEAEVRSATAVQMAINTLSYSELKAVHAIFEALDGEEGRLTASSIADEIGITRSVIVNALRKLESAGIIESRSLGMKGTY
LKVLNQQFIKELEK

The query sequence (length=254) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8c7u:D 262 260 1.0000 0.9695 0.9769 0.0 8c7u:A, 8c7u:B, 8c7u:C
2 5loe:A 258 251 0.5630 0.5543 0.5697 2.61e-95 2b18:A, 2gx5:C, 2hgv:A, 5loe:B, 5loe:C, 5loe:D
3 8c7s:A 256 254 0.5157 0.5117 0.5157 2.67e-85 8c7s:B, 5ey0:B, 5ey0:A, 5ey1:A, 5ey1:B
4 5n0l:A 156 158 0.2559 0.4167 0.4114 5.00e-32 5n0l:B, 5n0l:C, 5n0l:D, 5n0l:E, 5n0l:F
5 2p5v:G 158 52 0.0630 0.1013 0.3077 0.55 2p5v:A, 2p5v:B, 2p5v:C, 2p5v:E, 2p5v:D, 2p5v:F, 2p5v:H, 2p6s:A, 2p6s:G, 2p6s:B, 2p6s:D, 2p6s:C, 2p6s:F, 2p6s:E, 2p6s:H, 2p6t:A, 2p6t:G, 2p6t:B, 2p6t:D, 2p6t:C, 2p6t:F, 2p6t:E, 2p6t:H
6 8crx:H 134 40 0.0472 0.0896 0.3000 0.82 8cwo:H
7 4bed:A 1664 45 0.0551 0.0084 0.3111 1.4 4bed:C
8 2vbw:A 147 34 0.0472 0.0816 0.3529 2.0 2vbx:A, 2vby:A, 2vbz:A, 2vc0:A, 2vc1:A, 2w24:A
9 1wyu:B 473 64 0.0906 0.0486 0.3594 5.0 1wyu:D, 1wyu:F, 1wyu:H, 1wyv:B, 1wyv:D, 1wyv:F, 1wyv:H
10 7ajt:UN 147 24 0.0433 0.0748 0.4583 7.5 6zqa:UN, 6zqb:UN, 6zqc:UN
11 7suk:SS 197 24 0.0433 0.0558 0.4583 9.3 5wlc:SS
12 6dzi:q 131 40 0.0433 0.0840 0.2750 9.3 6dzk:H, 8fr8:i, 7kgb:h, 7msc:h, 7msh:h, 7msm:h, 7msz:h, 7mt2:h, 7mt3:h, 7mt7:h, 5o5j:H, 5o61:BH, 7sfr:h, 5v93:h, 8v9j:h, 8v9k:h, 8v9l:h, 8whx:i, 8wi7:i, 8wi9:i, 8wib:i, 8wid:i, 8wif:i, 5xyu:H, 5zeb:h, 5zep:h, 5zeu:h
13 9cc9:A 850 132 0.1220 0.0365 0.2348 9.9 9cc8:A, 9cc8:B, 9cc8:C, 9cc8:D, 9cc8:E, 9cc8:F, 9cc9:B, 9cc9:C, 9cc9:D, 9cc9:E, 9cc9:F, 9cc9:G, 9cc9:H, 9cc9:I, 9cc9:J, 9cc9:K, 9cc9:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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