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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNSAFSPNPDESVIDLYNNFGFD
GKLVVNYACSMAWG

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7eu4:C 94 94 1.0000 1.0000 1.0000 5.75e-67 7eu4:A, 7eu4:E, 7eu4:G
2 4naw:A 88 88 0.4149 0.4432 0.4432 4.04e-22 4naw:E, 4naw:I, 4naw:M
3 5cx3:A 119 95 0.2234 0.1765 0.2211 0.030 5cx3:B, 5cx3:C, 5cx3:D, 7r9w:A, 7r9z:A, 7ra0:A, 6tbe:A
4 5e6o:A 117 98 0.2660 0.2137 0.2551 0.31 5e6o:B, 5e6o:C, 5e6o:D
5 7bvq:A 455 33 0.1596 0.0330 0.4545 0.43 7bts:A, 7bu6:A, 7bu7:A, 7bvq:B
6 8pxc:A 252 42 0.1915 0.0714 0.4286 1.2
7 7elg:A 122 62 0.1489 0.1148 0.2258 1.3 5d94:A, 7ga8:A, 7ga9:A, 7gaa:A, 7gab:A, 7gac:A, 7gad:A, 7gae:A, 7gaf:A, 7gag:A, 7gah:A, 7gai:A, 7gaj:A, 7gak:A, 7gal:A, 7gam:A, 7gan:A, 7gao:A, 7gaq:A, 7gar:A, 7gas:A, 5gmv:B, 5gmv:A, 2k6q:A, 2lue:A, 2n9x:A, 8q7k:A, 8q7k:B, 5wrd:A, 5wrd:B, 5xad:A, 5xad:B, 5yiq:A, 5yis:B, 5yis:A, 2zjd:A, 2zjd:C
8 1tah:B 318 30 0.1383 0.0409 0.4333 2.1 1cvl:A, 2es4:A, 2es4:B, 1qge:E, 1tah:A, 1tah:C, 1tah:D
9 8khq:A 700 71 0.1702 0.0229 0.2254 3.0 8khq:B, 8khq:C, 8khq:D
10 7oi6:x 374 49 0.1489 0.0374 0.2857 3.6
11 7k6w:A 278 39 0.1383 0.0468 0.3333 7.9 7k6w:B, 7k6w:C, 7k6w:D
12 5k8g:A 511 79 0.2128 0.0391 0.2532 9.4 6x5v:A, 6x5w:A, 6x6m:A, 6x6q:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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