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BioLiP
>protein
MATEENVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAETQKLISEIDLLRKQNEQL
KHKLEQLRNSCA

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5i50:B 96 92 1.0000 0.9583 1.0000 3.77e-62 5i50:A, 1nkp:A, 1nkp:D
2 1hlo:A 80 70 0.3478 0.4000 0.4571 5.12e-14
3 5eyo:C 88 70 0.3478 0.3636 0.4571 8.94e-14 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
4 8ia3:E 111 91 0.3261 0.2703 0.3297 8.14e-05 8ia3:A, 8ia3:B, 8ia3:F
5 5gnj:B 77 73 0.2935 0.3506 0.3699 2.80e-04 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
6 7f2f:B 94 90 0.3152 0.3085 0.3222 0.001 7f2f:A
7 7xi4:A 283 65 0.2065 0.0671 0.2923 0.002 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
8 8osb:B 66 53 0.2500 0.3485 0.4340 0.003
9 5nj8:D 134 82 0.2500 0.1716 0.2805 0.003
10 1am9:C 82 59 0.2174 0.2439 0.3390 0.014 1am9:D, 1am9:A, 1am9:B
11 7xi3:A 287 62 0.1848 0.0592 0.2742 0.022
12 1a0r:B 339 25 0.1304 0.0354 0.4800 0.049 7e9h:B, 8jd6:B, 6rmv:A, 7tmw:B, 1xhm:A
13 1an4:A 65 52 0.1957 0.2769 0.3462 0.22 1an4:B
14 4kpo:A 317 64 0.2065 0.0599 0.2969 0.36 4kpo:B, 6zk5:A, 6zk5:B
15 4zpr:A 235 55 0.1848 0.0723 0.3091 0.97
16 7d8t:A 199 66 0.2283 0.1055 0.3182 1.1 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
17 1mdy:A 68 54 0.1848 0.2500 0.3148 1.6 1mdy:B, 1mdy:C, 1mdy:D
18 7z5i:A 56 53 0.1848 0.3036 0.3208 1.7 7z5i:B, 7z5k:A, 7z5k:B
19 7xq5:A 75 58 0.1739 0.2133 0.2759 1.7
20 6zk3:A 319 64 0.1957 0.0564 0.2812 1.8 6zk1:A, 6zk1:B, 6zk1:C, 6zk1:D, 6zk2:A, 6zk2:B, 6zk2:C, 6zk2:D, 6zk3:B, 6zk3:C, 6zk3:D, 6zk3:E, 6zk3:F, 6zk4:A, 6zk4:B, 6zk4:C, 6zk4:D
21 1a0a:A 63 58 0.2065 0.3016 0.3276 4.5 1a0a:B
22 7tom:A 498 38 0.1522 0.0281 0.3684 5.7 7tol:A
23 2xno:A 251 41 0.1630 0.0598 0.3659 6.4 5m55:A, 6sgd:A, 6sgh:A, 6sgk:A, 6sk9:A, 2wqo:A, 2xk3:A, 2xk6:A, 2xk7:A, 2xk8:A, 2xkc:A, 2xke:A
24 2w5b:A 271 41 0.1630 0.0554 0.3659 7.0 4a4x:A, 4afe:A, 2jav:A, 5m51:A, 5m53:A, 5m57:A, 6sgi:A, 2w5a:A, 2xk4:A, 2xkd:A, 2xkf:A, 2xnm:A, 2xnn:A, 2xnp:A
25 5mif:C 301 26 0.0978 0.0299 0.3462 8.1 5mif:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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