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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MARKVTTRWKITGTLIAETPLHIGGVGGDADTDLALAVNGAGEYYVPGTSLAGALRGWMTQLLNNDESQIKDLWGDHLDA
KRGASFVIVDDAVIHIPNNADVEIREGVGIDRHFGTAANGFKYSRAVIPKGSKFKLPLTFDSQDDGLPNALIQLLCALEA
GDIRLGAAKTRGLGRIKLDDLKLKSFALDKPEGIFSALLDQGKKLDWNQLKANVTYQSPPYLGISITWNPKDPVMVKAEG
DGLAIDILPLVSQVGSDVRFVIPGSSIKGILRTQAERIIRTICQSNGSEKNFLEQLRINLVNELFGSASLSQKIDLGKIG
ALAVNDCFSSLSMTPDQWKAVENATEMTGNLQPALKQATGYPNNISQAYKVLQPAMHVAVDRWTGGAAEGMLYSVLEPIG
VTWEPIQVHLDIARLKNYYHGKEEKLKPAIALLLLVLRDLANKKIPVGYGTNRGMGTITVSQITLNGKALPTELEPLNKT
MTCPNLTDLDEAFRQDLSTAWKEWIADPIDLCQQ

The query sequence (length=514) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8s9u:D 518 518 0.9981 0.9903 0.9903 0.0 8s9t:D, 8s9v:D, 8s9x:D
2 8wm4:A 1331 289 0.1420 0.0548 0.2526 3.45e-12
3 7yn9:A 1514 289 0.1420 0.0482 0.2526 3.65e-12
4 8d1v:A 1229 289 0.1420 0.0594 0.2526 4.06e-12
5 7ynd:A 1567 289 0.1420 0.0466 0.2526 4.15e-12
6 8wmc:A 1249 289 0.1420 0.0584 0.2526 4.25e-12
7 7y9y:A 1482 310 0.1479 0.0513 0.2452 6.71e-12 8wml:A
8 8wmi:A 1237 297 0.1381 0.0574 0.2391 5.44e-11
9 8eey:A 1544 297 0.1381 0.0460 0.2391 5.51e-11 7yna:A, 7ynb:A, 7ync:A
10 7wah:A 1473 297 0.1381 0.0482 0.2391 5.61e-11
11 8eex:A 1284 297 0.1381 0.0553 0.2391 6.09e-11
12 7y9x:A 1458 297 0.1381 0.0487 0.2391 6.15e-11 8gs2:A
13 7zol:B 1702 308 0.1459 0.0441 0.2435 6.95e-08 7zoq:B
14 8bmw:F 239 217 0.1226 0.2636 0.2903 8.61e-05 8bmw:G
15 4qts:C 186 182 0.1012 0.2796 0.2857 8.05e-04 4qts:D
16 8s9x:A 770 274 0.1206 0.0805 0.2263 0.011 8s9t:A, 8s9u:A, 8s9v:A
17 7y80:A 1218 207 0.0856 0.0361 0.2126 0.019 8gu6:A
18 6ifn:F 220 207 0.0992 0.2318 0.2464 0.023 6ifk:G, 6ifk:F, 6ifk:E, 6ifl:D, 6ifl:E, 6ifl:F, 6ifn:E, 6ifn:G, 6ifr:G, 6ifr:F, 6ifr:E, 6ifu:D, 6ifu:E, 6ifu:F, 6ify:G, 6ify:F, 6ify:E, 6ifz:G, 6ifz:F, 6ifz:E, 6ig0:G, 6ig0:F, 6ig0:E, 6nud:C, 6nud:E, 6nud:N, 6nud:O, 6nud:P, 6nue:C, 6nue:E, 6nue:N, 6nue:O, 6nue:P
19 8d8n:B 1256 208 0.0856 0.0350 0.2115 0.082 8d9e:B, 8d9i:B, 7y81:A
20 9ash:H 214 205 0.1031 0.2477 0.2585 0.11 9ash:F, 9ash:G, 9ash:I, 9asi:F, 9asi:H, 9asi:G, 9asi:I, 6xn3:F, 6xn3:H, 6xn3:G, 6xn3:I, 6xn4:F, 6xn4:H, 6xn4:G, 6xn5:I, 6xn5:F, 6xn5:H, 6xn5:G, 6xn7:F, 6xn7:H, 6xn7:G, 6xn7:I
21 7uzw:E 184 78 0.0428 0.1196 0.2821 0.12 7uzx:E
22 8gna:A 1188 206 0.0856 0.0370 0.2136 0.13
23 7y82:A 1341 210 0.0856 0.0328 0.2095 0.16
24 7y8t:A 1298 212 0.0856 0.0339 0.2075 0.21 8d9g:B, 7xsq:A, 7xsr:B, 7y8y:A
25 7y84:A 1242 212 0.0856 0.0354 0.2075 0.22 7x7a:A, 7x7r:A, 7xc7:A, 7y83:A, 7y85:A
26 5n6n:C 698 151 0.0739 0.0544 0.2517 0.23 5m4a:A
27 4n0l:A 335 59 0.0370 0.0567 0.3220 0.28 4n0l:B
28 8bmw:H 275 55 0.0389 0.0727 0.3636 0.45 8bmw:I
29 8bmw:H 275 92 0.0467 0.0873 0.2609 2.4 8bmw:I
30 2azn:A 219 67 0.0447 0.1050 0.3433 0.74 2azn:B, 2azn:C, 2azn:D, 2azn:E, 2azn:F
31 6mur:D 287 71 0.0467 0.0836 0.3380 0.94 6iqw:C, 6iqw:D, 6mur:C, 6mus:C, 6mus:D, 6mus:K, 6mut:C, 6mut:D, 6muu:C, 6muu:D, 6o7e:C, 6o7e:D, 6o7h:C, 6o7h:D, 6o7i:C, 6o7i:D, 6o7i:K
32 8d97:A 1600 217 0.0875 0.0281 0.2074 0.98
33 8d97:A 1600 121 0.0603 0.0194 0.2562 6.3
34 8d97:A 1600 116 0.0506 0.0163 0.2241 7.0
35 7xss:B 1282 217 0.0875 0.0351 0.2074 1.0 8d9f:B, 8d9h:B, 7x8a:A, 7xso:A, 7xsp:B, 7xt4:B
36 6ui4:A 692 80 0.0467 0.0347 0.3000 1.5
37 3m0v:C 433 69 0.0409 0.0485 0.3043 1.8 4gji:A, 4gji:B, 4gji:C, 4gji:D, 4gjj:A, 4gjj:B, 4gjj:C, 4gjj:D, 2hcv:A, 2hcv:B, 2hcv:C, 2hcv:D, 2i56:A, 2i56:B, 2i56:C, 2i56:D, 2i57:A, 2i57:B, 2i57:C, 2i57:D, 3itl:A, 3itl:B, 3itl:C, 3itl:D, 3ito:A, 3ito:B, 3ito:C, 3ito:D, 3itt:A, 3itt:B, 3itt:C, 3itt:D, 3itv:A, 3itv:B, 3itv:C, 3itv:D, 3itx:A, 3itx:B, 3itx:C, 3itx:D, 3iud:A, 3iud:B, 3iud:C, 3iud:D, 3iuh:A, 3iuh:B, 3iuh:C, 3iuh:D, 3iui:A, 3iui:B, 3iui:C, 3iui:D, 3m0h:A, 3m0h:B, 3m0h:C, 3m0h:D, 3m0l:A, 3m0l:B, 3m0l:C, 3m0l:D, 3m0m:A, 3m0m:B, 3m0m:C, 3m0m:D, 3m0v:A, 3m0v:B, 3m0v:D, 3m0x:A, 3m0x:B, 3m0x:C, 3m0x:D, 3m0y:A, 3m0y:B, 3m0y:C, 3m0y:D
38 1fa9:A 834 42 0.0253 0.0156 0.3095 2.3 2ati:A, 2ati:B, 3ceh:A, 3ceh:B, 3cej:A, 3cej:B, 3cem:A, 3cem:B, 3dd1:A, 3dd1:B, 3dds:A, 3dds:B, 3ddw:A, 3ddw:B, 8ems:B, 8ems:A, 1fc0:A, 1fc0:B, 1l5q:A, 1l5q:B, 1l5r:A, 1l5r:B, 1l5s:A, 1l5s:B, 1l7x:A, 1l7x:B, 1xoi:A, 1xoi:B, 2zb2:A, 2zb2:B
39 8do6:H 327 45 0.0292 0.0459 0.3333 2.8 7uzz:E, 7v00:E, 7v01:E, 7v02:E
40 8do6:E 205 82 0.0428 0.1073 0.2683 4.2 8do6:G, 8do6:F, 7uzw:A, 7uzw:B, 7uzw:C, 7uzw:D, 7uzx:A, 7uzx:B, 7uzx:C, 7uzx:D, 7uzy:D, 7uzy:C, 7uzy:A, 7uzy:B, 7uzz:D, 7uzz:C, 7uzz:A, 7uzz:B, 7v00:A, 7v00:B, 7v00:C, 7v00:D, 7v01:A, 7v01:B, 7v01:C, 7v02:A, 7v02:B, 7v02:C
41 3fir:A 231 74 0.0447 0.0996 0.3108 4.9 3fir:B, 3fj7:A, 3fj7:B, 3fjm:A, 3fjm:B, 2hxw:A, 2hxw:B
42 6ifr:H 353 74 0.0447 0.0652 0.3108 5.0 6ifk:H, 6ifl:H, 6ifn:H, 6ifu:H, 6ify:H, 6ifz:H, 6ig0:H
43 5ie9:C 95 67 0.0331 0.1789 0.2537 7.3 5ie9:A, 5ie9:B, 5ie9:D
44 5u07:A 190 46 0.0272 0.0737 0.3043 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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