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BioLiP
>protein
MARGVNKVILIGNLGDDPELRYTGSGTAVCNMSLATNETYTDSDGNEVQNTEWHDVVAWGRLGEICNEYLDKGSQVYFEG
KLQTRSWTRYSTEVKAQEMMFL

The query sequence (length=102) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5odp:G 100 101 0.9118 0.9300 0.9208 1.09e-63 5odp:A
2 5odn:D 106 108 0.9118 0.8774 0.8611 2.50e-61 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
3 1eqq:B 120 100 0.5588 0.4750 0.5700 9.27e-35 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
4 6irq:C 104 96 0.5392 0.5288 0.5729 3.74e-32 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
5 6bhx:C 102 104 0.3824 0.3824 0.3750 1.81e-18 6bhx:A, 6bhx:B
6 3ulp:C 116 95 0.3333 0.2931 0.3579 8.09e-18 3ulp:A, 3ulp:B, 3ulp:D
7 7dep:B 102 100 0.3725 0.3725 0.3800 1.72e-17
8 2vw9:A 108 82 0.3333 0.3148 0.4146 5.81e-17 2vw9:B
9 3vdy:A 101 99 0.3627 0.3663 0.3737 3.84e-16 3vdy:B
10 6rup:A 111 109 0.3529 0.3243 0.3303 9.17e-15 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
11 8uzt:B 100 103 0.3431 0.3500 0.3398 1.94e-13
12 8gw5:A 99 104 0.3333 0.3434 0.3269 5.18e-13 7ym1:A
13 3udg:C 214 96 0.3529 0.1682 0.3750 7.18e-13 3udg:B, 3udg:A
14 3udg:C 214 105 0.3922 0.1869 0.3810 6.95e-10 3udg:B, 3udg:A
15 3a5u:A 118 93 0.3431 0.2966 0.3763 9.11e-13 3a5u:B
16 5gqo:A 97 51 0.1667 0.1753 0.3333 0.15
17 1zm8:A 239 64 0.1667 0.0711 0.2656 0.66
18 7f75:D 1142 33 0.1176 0.0105 0.3636 3.0 7ckq:D
19 6zca:Y 1127 33 0.1176 0.0106 0.3636 3.1 6zfb:Y, 6zfb:y
20 6wvk:D 1184 33 0.1176 0.0101 0.3636 3.1 6wvj:D
21 4iub:L 602 26 0.0980 0.0166 0.3846 6.3 5d51:L, 4iuc:L, 4iud:L, 5mdj:L, 5mdk:L, 5mdl:L, 7odg:L, 7odh:L, 8pou:L, 8pov:L, 8pow:L, 8pox:L, 8poz:L, 3rgw:L, 4ttt:L
22 4rku:G 84 16 0.0882 0.1071 0.5625 7.2
23 4ln1:B 321 49 0.1373 0.0436 0.2857 7.3 4ln1:A, 4ln1:C, 4ln1:D
24 2c9o:A 398 27 0.0980 0.0251 0.3704 7.3 2c9o:B
25 5zji:G 97 16 0.0882 0.0928 0.5625 7.7
26 7bcb:B 97 24 0.0980 0.1031 0.4167 9.4 7bca:A, 7bca:B, 7bcb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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