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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MARGVNKVILIGNLGDDPELRYTGSGTAVCNMSLATNETYTDSDGNEVQNTEWHDVVAWGRLGEICNEYLDKGSQVYFEG
KLQTRSWEDTRYSTEVKAQEMMFLD

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5odp:G 100 104 0.8952 0.9400 0.9038 3.49e-64 5odp:A
2 5odn:D 106 108 0.9048 0.8962 0.8796 4.57e-63 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
3 1eqq:B 120 100 0.5429 0.4750 0.5700 4.84e-35 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
4 6irq:C 104 96 0.5238 0.5288 0.5729 1.13e-32 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
5 7dep:B 102 101 0.3714 0.3824 0.3861 2.13e-20
6 6bhx:C 102 105 0.3810 0.3922 0.3810 2.45e-20 6bhx:A, 6bhx:B
7 3vdy:A 101 100 0.3714 0.3861 0.3900 2.33e-19 3vdy:B
8 2vw9:A 108 106 0.3714 0.3611 0.3679 6.89e-18 2vw9:B
9 3ulp:C 116 88 0.3143 0.2845 0.3750 9.29e-18 3ulp:A, 3ulp:B, 3ulp:D
10 6rup:A 111 109 0.3524 0.3333 0.3394 1.14e-15 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
11 8gw5:A 99 105 0.3333 0.3535 0.3333 1.83e-14 7ym1:A
12 8uzt:B 100 105 0.3333 0.3500 0.3333 1.04e-13
13 3udg:C 214 86 0.3143 0.1542 0.3837 7.24e-12 3udg:B, 3udg:A
14 3udg:C 214 105 0.3905 0.1916 0.3905 8.88e-11 3udg:B, 3udg:A
15 3a5u:A 118 108 0.3524 0.3136 0.3426 1.91e-11 3a5u:B
16 1zm8:A 239 64 0.1619 0.0711 0.2656 0.86
17 5gqo:A 97 53 0.1714 0.1856 0.3396 1.0
18 1gvh:A 396 35 0.1048 0.0278 0.3143 1.2
19 4ln1:B 321 49 0.1333 0.0436 0.2857 6.3 4ln1:A, 4ln1:C, 4ln1:D
20 4iub:L 602 26 0.0952 0.0166 0.3846 6.7 5d51:L, 4iuc:L, 4iud:L, 5mdj:L, 5mdk:L, 5mdl:L, 7odg:L, 7odh:L, 8pou:L, 8pov:L, 8pow:L, 8pox:L, 8poz:L, 3rgw:L, 4ttt:L
21 4rku:G 84 16 0.0857 0.1071 0.5625 6.9
22 5zji:G 97 16 0.0857 0.0928 0.5625 7.3
23 4pee:C 446 42 0.1333 0.0314 0.3333 8.0 5hdr:A, 5hdr:B, 5hdr:C, 5hdr:D, 6hzy:A, 6hzy:B, 5i5r:A, 5i5r:B, 5i5r:C, 5i5r:D, 4j28:A, 4j28:B, 4jfs:A, 4jfs:B, 4jft:A, 4jft:B, 4jfu:A, 4jfu:B, 4jfv:A, 4jfv:B, 4jfv:C, 4jfv:D, 4jfw:A, 4jfw:B, 4jfw:C, 4jfw:D, 4jl1:A, 4jl1:B, 4jl2:A, 4jl2:B, 4pcs:A, 4pcs:B, 4pcs:C, 4pcs:D, 4pct:A, 4pct:B, 4pct:C, 4pct:D, 4pee:A, 4pee:B, 4pee:D, 4wsj:A, 4wsj:B, 4wsj:C, 4wsj:D, 4wsk:A, 4wsk:B, 4wsk:C, 2wvs:A, 2wvs:B, 2wvs:C, 2wvs:D, 2wvt:A, 2wvt:B, 2wvu:A, 2wvu:B, 2wvu:C, 2wvu:D, 2xib:A, 2xib:B, 2xib:C, 2xib:D, 2xii:A, 2xii:B
24 2c9o:A 398 27 0.0952 0.0251 0.3704 8.5 2c9o:B
25 8b80:A 474 28 0.1048 0.0232 0.3929 9.4 8b81:A, 8b81:B, 5okb:B, 5okb:C, 5okb:D, 5oke:C, 5oke:D, 5oke:A, 5oke:B, 5okg:C, 5okg:D, 5okg:A, 5okg:B, 5okk:A, 5okk:B, 5okq:A, 5okq:B, 5okr:A, 5okr:B, 5oks:A, 5oks:B, 4zen:A, 4zen:B, 4zep:A, 4zep:B, 4zfm:D, 4zfm:A, 4zfm:B, 4zfm:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218