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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MAQRAEGLATVLAIGTAVPANCVYQATYPDYYFRVTKSEHLADLKEKFQRMCDKSMIRKRHMHLTEEILIKNPKICAHME
TSLDARHAIALVEVPKLGQGAAEKAIKEWGQPLSKITHLVFCTTSGVDMPGADYQLTKLLGLSPTVKRLMMYQQGCFGGA
TVLRLAKDIAENNRGARVLVVCSEITAMAFRGPCKSHLDSLVGHALFGDGAAAAIIGADPDQLDEQPVFQLVSASQTILP
ESEGAIDGHLTEAGLTIHLLKDVPGLISENIEQALEDAFEPLGIHNWNSIFWIAHPGGPAILDRVEDRVGLDKKRMRASR
EVLSEYGNMSSASVLFVLDVMRKSSAKDGLATTGEGKDWGVLFGFGPGLTVETLVLHSVPVP

The query sequence (length=382) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8b3c:B 383 382 1.0000 0.9974 1.0000 0.0 8b32:A, 8b32:B, 8b35:A, 8b35:B, 8b3c:A
2 8v8m:A 389 380 0.7958 0.7815 0.8000 0.0 8v8m:C
3 7bur:B 389 378 0.7487 0.7352 0.7566 0.0 7bur:A, 8jrd:A, 8jrd:B
4 1chw:A 389 380 0.7199 0.7069 0.7237 0.0 1bq6:A, 1cgk:A, 1cgz:A, 1chw:B, 1cml:A, 1d6h:A, 1u0w:A, 1u0w:B, 1u0w:C, 1u0w:D
5 3wd7:A 401 380 0.7042 0.6708 0.7079 0.0 7cct:A, 6l7j:A, 3wd7:B
6 6op5:A 383 382 0.7147 0.7128 0.7147 0.0 6op5:B
7 1z1f:A 388 379 0.6466 0.6366 0.6517 0.0
8 6j1m:A 381 380 0.6309 0.6325 0.6342 0.0 6j1m:B, 6j1n:A, 6j1n:B
9 7vf0:B 396 385 0.6623 0.6389 0.6571 0.0 7vez:A, 7vez:B, 7vez:C, 7vez:D, 7vf0:A, 7vf0:C, 7vf0:D
10 1ee0:A 376 375 0.6283 0.6383 0.6400 0.0 1ee0:B
11 6gw3:A 383 379 0.6361 0.6345 0.6412 1.03e-180 6gw3:B, 6gw3:C, 6gw3:D, 7w6g:C, 7w6g:D
12 3awj:A 380 378 0.6230 0.6263 0.6296 1.83e-180
13 7yj6:A 390 385 0.6466 0.6333 0.6416 8.37e-175 7yj5:A, 7yj6:B, 7yj7:A, 7yj8:A, 7yj9:A, 7yja:A, 7yja:B, 7yjb:A
14 5wx6:B 376 374 0.5995 0.6090 0.6123 1.17e-174 5wx3:A, 5wx3:B, 5wx3:D, 5wx6:A, 5wx6:C, 5wx6:D, 5wx7:A, 5wx7:B, 5wx7:C, 5wx7:D
15 1xes:A 387 380 0.5969 0.5891 0.6000 2.31e-173 1xes:B, 1xes:C, 1xes:D, 1xet:B, 1xet:C, 1xet:D
16 7f08:J 379 378 0.5785 0.5831 0.5847 3.29e-167 7f08:B, 7f08:D, 7f08:L
17 5wx3:C 353 374 0.5681 0.6147 0.5802 4.28e-159
18 5w8q:A 379 372 0.5497 0.5541 0.5645 1.11e-155 5w8q:B, 5wc4:A, 5wc4:B
19 2d3m:A 405 383 0.5524 0.5210 0.5509 1.70e-150 2d3m:B, 2d52:A, 2d52:B
20 7d41:A 367 379 0.2749 0.2861 0.2770 2.03e-37 7d41:B
21 4b0n:A 379 279 0.2199 0.2216 0.3011 1.55e-32 4b0n:B
22 3eut:A 379 305 0.2408 0.2427 0.3016 9.17e-31 3eut:C
23 3wy0:B 377 300 0.2225 0.2255 0.2833 5.95e-27 3wxy:A, 3wxy:B, 3wy0:A
24 4jap:C 353 380 0.2382 0.2578 0.2395 3.69e-24 4jao:C, 4jao:B, 4jap:B, 4jap:A, 4jaq:D, 4jaq:A, 4jaq:C, 4jaq:B, 4jd3:C, 4jd3:B
25 5bqs:A 323 234 0.1545 0.1827 0.2521 1.48e-05 5bqs:B
26 6kvs:A 313 334 0.2199 0.2684 0.2515 2.14e-05 6kvs:B
27 1mzj:A 334 345 0.2094 0.2395 0.2319 5.45e-05 1mzj:B
28 3il5:A 320 323 0.1859 0.2219 0.2198 1.58e-04 3il4:A, 3il4:B, 3il4:C, 3il4:D, 3il5:B, 3il5:C, 3il5:D, 3il6:A
29 3sqz:A 388 130 0.0942 0.0928 0.2769 8.66e-04
30 8vda:A 311 135 0.0969 0.1190 0.2741 0.016
31 8d1u:A 318 305 0.1963 0.2358 0.2459 0.041 5bnm:A, 5bnr:A, 5bns:A, 5bns:B, 1ebl:A, 1ebl:B, 2eft:A, 2eft:B, 2gyo:A, 1hnd:A, 1hnh:A, 1hnj:A, 1mzs:A, 6x7r:A, 4z8d:A, 4z8d:B
32 3v4x:A 387 106 0.0759 0.0749 0.2736 0.25 3v4x:B, 3v4x:C, 3v4x:D, 1ysl:B
33 5hwo:A 418 114 0.0916 0.0837 0.3070 0.26 5hwp:A, 5hwq:A, 5hwr:A
34 1xpl:A 389 86 0.0550 0.0540 0.2442 0.28 1txt:A, 1txt:B, 1txt:C, 1txt:D, 1xpk:A, 1xpk:B, 1xpk:C, 1xpk:D, 1xpl:B, 1xpl:C, 1xpl:D, 1xpm:A, 1xpm:B, 1xpm:C, 1xpm:D
35 5yo9:B 366 291 0.1832 0.1913 0.2405 0.39 5yoa:B
36 2qnx:A 334 173 0.1126 0.1287 0.2486 0.42 2qnx:B, 2qny:A, 2qny:B, 2qnz:A, 2qnz:B, 2qo0:A, 2qo0:B, 2qo1:A, 2qo1:B, 2qx1:A, 2qx1:B, 1u6s:A, 1u6s:B
37 3h77:B 338 229 0.1623 0.1834 0.2707 0.43 3h77:A, 3h78:A, 3h78:B
38 6zpo:b 209 82 0.0628 0.1148 0.2927 0.88 2wss:T, 6z1u:b, 6zbb:b, 6zmr:b, 6zqm:b, 6zqn:b
39 6l2c:A 402 76 0.0628 0.0597 0.3158 1.2 6l2c:B, 6l2c:C, 6l2c:D
40 6et3:A 309 90 0.0707 0.0874 0.3000 1.8
41 8jdb:A 456 91 0.0733 0.0614 0.3077 4.2 8jdc:A, 8jdd:A, 8jde:A, 8jdf:A, 8jdg:A, 8jdn:A, 8jdo:A, 8jdp:A, 8jdq:A, 8jdr:A, 8jds:A, 8jdt:A, 8jdu:A, 8jdv:A, 8jdx:A, 8jdy:A, 8jdz:A
42 5l4g:K 393 62 0.0550 0.0534 0.3387 5.4 8cvt:D, 5gjq:K, 5gjr:K, 5gjr:y, 5m32:e, 6msb:D, 6msd:D, 6mse:D, 6msg:D, 6msh:D, 6msj:D, 6msk:D, 7qxn:D, 7qxp:D, 7qxu:D, 7qxw:D, 7qxx:D, 7qy7:D, 7qya:D, 7qyb:D, 5t0c:AD, 5t0c:BD, 5t0g:D, 5t0h:D, 5t0i:D, 5t0j:D, 5vfp:D, 5vfq:D, 5vfr:D, 5vfs:D, 7w37:D, 7w38:D, 7w39:D, 7w3a:D, 7w3b:D, 7w3c:D, 7w3f:D, 7w3g:D, 7w3h:D, 7w3i:D, 7w3j:D, 7w3m:D, 6wjd:D, 6wjn:D
43 4v8m:Bv 157 49 0.0393 0.0955 0.3061 6.2 8ova:Bv, 8ove:Bv
44 2j8u:E 194 30 0.0366 0.0722 0.4667 6.4 2j8u:L, 2jcc:E, 2jcc:L, 1lp9:E, 1lp9:L, 2uwe:E, 2uwe:L
45 1ahp:A 796 195 0.1178 0.0565 0.2308 7.8 1ahp:B, 2asv:A, 2asv:B, 2av6:A, 2av6:B, 2aw3:A, 2aw3:B, 2azd:A, 2azd:B, 1e4o:A, 1e4o:B, 2ecp:A, 2ecp:B, 1l5v:A, 1l5v:B, 1l5w:A, 1l5w:B, 1l6i:A, 1l6i:B, 1qm5:A, 1qm5:B, 8rvk:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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