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BioLiP
>protein
MAQKVGGSDGCPRCGQAVYAAEKVIGAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGA
LIHSQ

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1b8t:A 192 85 1.0000 0.4427 1.0000 9.59e-57 1ctl:A
2 1b8t:A 192 58 0.3765 0.1667 0.5517 9.62e-13 1ctl:A
3 2o13:A 58 57 0.5294 0.7759 0.7895 6.73e-30
4 1cxx:A 59 59 0.5529 0.7966 0.7966 6.75e-30 1ibi:A, 1qli:A
5 1iml:A 76 66 0.4000 0.4474 0.5152 1.31e-18
6 1a7i:A 60 60 0.3529 0.5000 0.5000 3.59e-16
7 2o10:A 60 57 0.3176 0.4500 0.4737 2.19e-14
8 2cu8:A 76 59 0.3412 0.3816 0.4915 6.96e-14
9 2d8y:A 91 83 0.3294 0.3077 0.3373 1.20e-10
10 2cup:A 101 65 0.2941 0.2475 0.3846 1.42e-09
11 1x4k:A 72 61 0.2353 0.2778 0.3279 7.34e-08
12 2dar:A 90 57 0.2235 0.2111 0.3333 4.43e-07
13 2lzu:A 72 63 0.2471 0.2917 0.3333 5.00e-07
14 2co8:A 82 59 0.2471 0.2561 0.3559 8.09e-07
15 2dj7:A 80 65 0.2471 0.2625 0.3231 9.95e-07
16 2ehe:A 82 61 0.2000 0.2073 0.2787 1.80e-06
17 2cur:A 69 61 0.2471 0.3043 0.3443 4.75e-06
18 2d8x:A 70 60 0.2471 0.3000 0.3500 7.00e-06
19 2miu:A 98 62 0.2000 0.1735 0.2742 1.63e-05
20 1g47:A 70 64 0.2235 0.2714 0.2969 1.85e-05 2kbx:B
21 1wyh:A 72 47 0.1882 0.2222 0.3404 2.24e-05
22 8y6k:A 741 53 0.2235 0.0256 0.3585 2.57e-05 2bra:A, 2bra:B, 2bry:A, 2bry:B, 2c4c:A, 2c4c:B, 4txi:A, 4txk:A
23 7qb0:A 127 50 0.2235 0.1496 0.3800 4.07e-05
24 7qb0:A 127 64 0.2471 0.1654 0.3281 0.006
25 4jcj:C 150 62 0.2471 0.1400 0.3387 5.28e-05 4jcj:A, 4jcj:B
26 4jcj:C 150 36 0.1412 0.0800 0.3333 6.5 4jcj:A, 4jcj:B
27 1zfo:A 30 29 0.1765 0.5000 0.5172 6.50e-05
28 2d8z:A 70 57 0.2235 0.2714 0.3333 9.02e-05
29 3ixe:B 70 51 0.1765 0.2143 0.2941 1.61e-04
30 3f6q:B 72 56 0.2000 0.2361 0.3036 1.79e-04 4hi8:B, 4hi9:B
31 6cme:A 154 67 0.2471 0.1364 0.3134 1.93e-04 6cme:B, 3mmk:A, 3mmk:B
32 1x63:A 82 61 0.2118 0.2195 0.2951 3.11e-04
33 2cor:A 79 55 0.2235 0.2405 0.3455 5.42e-04
34 2egq:A 77 51 0.2118 0.2338 0.3529 6.61e-04
35 7lt9:B 131 65 0.2824 0.1832 0.3692 0.002 7d2s:B, 7d2t:B, 7d2t:D, 7d2u:B, 1nyp:A, 1u5s:B
36 7lt9:B 131 58 0.2000 0.1298 0.2931 0.10 7d2s:B, 7d2t:B, 7d2t:D, 7d2u:B, 1nyp:A, 1u5s:B
37 2cuq:A 80 58 0.1765 0.1875 0.2586 0.002
38 6u4m:A 65 44 0.1647 0.2154 0.3182 0.002 6u4n:B
39 1x4l:A 72 41 0.1647 0.1944 0.3415 0.010
40 2dlo:A 81 66 0.2000 0.2099 0.2576 0.012
41 2jtn:A 182 60 0.1882 0.0879 0.2667 0.013
42 1x61:A 72 49 0.1647 0.1944 0.2857 0.016
43 2rgt:B 154 60 0.1882 0.1039 0.2667 0.019 2rgt:A
44 2xqn:T 125 58 0.1882 0.1280 0.2759 0.019 2iyb:E, 2iyb:F, 2iyb:G, 2iyb:H
45 2xqn:T 125 41 0.1529 0.1040 0.3171 2.3 2iyb:E, 2iyb:F, 2iyb:G, 2iyb:H
46 6mif:A 79 61 0.2235 0.2405 0.3115 0.022
47 1x64:A 89 60 0.2353 0.2247 0.3333 0.028
48 2dfy:X 158 63 0.2118 0.1139 0.2857 0.033 2dfy:C, 1rut:X
49 1x3h:A 80 54 0.1882 0.2000 0.2963 0.040
50 2l4z:A 121 60 0.2000 0.1405 0.2833 0.11
51 2lxd:A 123 42 0.1765 0.1220 0.3571 0.17 2l6y:B, 2l6z:C
52 1m3v:A 122 59 0.1882 0.1311 0.2712 0.31
53 6yxy:BX 133 35 0.1412 0.0902 0.3429 0.54 7aoi:BX, 6hiv:BX, 6hix:BX
54 4kfz:B 148 42 0.1765 0.1014 0.3571 0.60 4kfz:A, 2xjy:A, 2xjz:A, 2xjz:B, 2xjz:C, 2xjz:D, 2xjz:E, 2ypa:C
55 4kfz:B 148 49 0.1765 0.1014 0.3061 3.4 4kfz:A, 2xjy:A, 2xjz:A, 2xjz:B, 2xjz:C, 2xjz:D, 2xjz:E, 2ypa:C
56 6tmf:Z 50 32 0.1529 0.2600 0.4062 1.2
57 1v6g:A 81 31 0.1529 0.1605 0.4194 1.9
58 2ecm:A 55 34 0.1176 0.1818 0.2941 2.7
59 1q3b:A 259 34 0.1412 0.0463 0.3529 3.2 2ea0:A, 6fbu:A, 1k3w:A, 1k3x:A, 2opf:A, 2oq4:A, 2oq4:B, 1q39:A, 1q3c:A
60 2jbh:B 213 29 0.1176 0.0469 0.3448 3.9 2jbh:A
61 3w5k:B 110 58 0.1882 0.1455 0.2759 4.1
62 1x62:A 79 50 0.1529 0.1646 0.2600 6.0
63 7aih:Ax 167 31 0.1059 0.0539 0.2903 6.2 7am2:Ax, 7ane:Ax
64 4yx6:A 518 24 0.1059 0.0174 0.3750 8.0 4yx6:B, 4z9r:A, 4z9r:B
65 8pv4:CU 395 24 0.1412 0.0304 0.5000 8.8 8pv6:CU, 8pv8:CU
66 4xgl:A 342 35 0.1294 0.0322 0.3143 9.4 4rou:B, 4rou:A, 4xgm:A
67 8cbk:E 470 35 0.1294 0.0234 0.3143 9.7 7onu:E
68 6lkc:B 533 21 0.1059 0.0169 0.4286 10.0 6lkc:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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