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BioLiP
>protein
MAPGDIEDMIKAGIPGARVTIRDLAGDGDHYAAEVVAEAFRGKTRVQQHQMVYNALKGNMGGILHALALQTSAPE

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5nfm:A 75 75 1.0000 1.0000 1.0000 5.26e-51 5nfl:A
2 3tr3:B 81 71 0.3733 0.3457 0.3944 3.08e-13 3tr3:A
3 2ihv:A 563 23 0.1600 0.0213 0.5217 1.1 2iht:A, 2iht:B, 2iht:C, 2iht:D, 2ihu:A, 2ihu:B, 2ihu:C, 2ihu:D, 2ihv:B, 2ihv:C, 2ihv:D, 1upa:A, 1upa:B, 1upa:C, 1upa:D, 1upb:A, 1upb:B, 1upb:C, 1upb:D, 1upc:A, 1upc:B, 1upc:C, 1upc:D, 1upc:E, 1upc:F
4 8rwj:D 676 69 0.2400 0.0266 0.2609 2.7 8rwj:I, 8rwj:A, 8rwj:B, 8rwj:C, 8rwj:E, 8rwj:F, 8rwj:G, 8rwj:H, 1ry2:A
5 5f55:A 705 46 0.1733 0.0184 0.2826 3.8 5f54:A, 5f56:A, 6lrd:A
6 5mrc:NN 115 43 0.2000 0.1304 0.3488 7.7 8d8k:N, 8d8l:N, 5mre:NN, 5mrf:NN, 8om2:N, 8om3:N, 8om4:N
7 2x7f:A 276 30 0.1067 0.0290 0.2667 9.0 5ax9:B, 2x7f:D, 2x7f:E
8 6ra7:A 302 30 0.1067 0.0265 0.2667 9.1 5ax9:A, 5ax9:C, 5d7a:A, 5d7a:B, 5d7a:C, 5di1:A, 5j95:A, 4obp:A, 6ra5:A, 4rvt:A, 4u40:A, 4u42:A, 4u43:A, 4u44:A, 4u45:A, 5w5q:A, 8wm0:A, 2x7f:B, 2x7f:C, 7xzq:A, 7xzr:A, 7xzr:B, 4zk5:A, 4zp5:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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