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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MANAVIGNVVTRFPPEPSGYLHVGHAKAAFLNNYYAQMYEGKMLLRFDDTNPDIKYEKSIIEDLENLGLKYEKISYSSDH
FDLLEKYCIDMIKMNKAYADDTGVEDMRNQRGEGIESINRNNSIEKNLELFNEMRKGTEIGQKNCIRAKINMQSKNKCMR
DPVMYRCIKYKCYPTYDFACPIIDSIEGVTHALRTNEYSDRIEQYNWFISTLNLRKVYIYEFSRLAFVKTVMSKRKLKWF
VENNVVDSWVDPRFPTIKGILRRGLTKEALFQFILEQNLMQWDKLWSINKQIIDPIIPRYAAVDKNSSILLILTDLTDQV
IQKERDLHMKNKSLGTCNMYYNNKYLIELEDAQTLLENEEITLIKLGNIIIKNIEKENGKIKQINALSNFHTKKKIHWLP
YLPQQLITCTLYEYDHLITVDKDDWTNFINFNSKHETLVYAEPSISSLKVSDKFQFERRGYFILDKIDPHHHLHLIKIPD
G

The query sequence (length=481) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7wao:A 502 505 0.9875 0.9462 0.9406 0.0 7waj:A, 7wak:A, 7wal:A
2 4jyz:A 542 513 0.3742 0.3321 0.3509 2.64e-77 1euq:A, 1euy:A, 1exd:A, 1gtr:A, 1gts:A, 4jxx:A, 4jxz:A, 1o0b:A, 1o0c:A, 1qrs:A, 1qrt:A, 1qru:A, 1qtq:A, 2rd2:A, 2re8:A, 1zjw:A
3 5zdk:A 543 513 0.3430 0.3039 0.3216 9.55e-72 5zdl:A
4 4h3s:A 585 434 0.2994 0.2462 0.3318 1.77e-59
5 8uk6:A 573 433 0.2973 0.2496 0.3303 8.27e-59
6 3aii:A 455 490 0.2744 0.2901 0.2694 1.62e-40
7 2cuz:A 468 273 0.1518 0.1560 0.2674 5.82e-13 2cv0:A, 2cv0:B, 2cv1:A, 2cv1:B, 2cv2:A, 2cv2:B, 2dxi:A, 2dxi:B, 1g59:A, 1g59:C, 1j09:A, 1n75:A, 1n77:A, 1n77:B, 1n78:A, 1n78:B
8 2cfo:A 484 214 0.1102 0.1095 0.2477 1.33e-10
9 3al0:C 564 212 0.1019 0.0869 0.2311 3.44e-09 3afh:A, 3akz:B, 3akz:D, 3akz:C, 3akz:A
10 8vc5:A 488 266 0.1331 0.1311 0.2406 5.77e-08 8vc5:B
11 8i9i:A 468 211 0.1081 0.1111 0.2464 8.58e-07 8i9i:B
12 4g6z:A 380 240 0.1123 0.1421 0.2250 1.63e-06
13 6brl:A 502 230 0.1164 0.1116 0.2435 6.65e-06
14 4gri:B 485 224 0.1227 0.1216 0.2634 7.84e-06 4gri:A
15 4a91:A 290 66 0.0457 0.0759 0.3333 1.31e-04 1nzj:A
16 2zue:A 628 119 0.0624 0.0478 0.2521 0.14 2zuf:A
17 3bh6:B 314 31 0.0291 0.0446 0.4516 6.2 3bh7:B
18 6hbz:B 270 93 0.0624 0.1111 0.3226 9.0 6hbz:A, 6hc0:D, 6hc1:A
19 3vmm:A 471 188 0.1081 0.1104 0.2766 9.7 3wnz:A, 3wo0:A, 3wo1:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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