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BioLiP
>protein
MAMDHYLDIRLRPDPEFPPAQLMSVLFGKLHQALVAQGGDRIGVSFPDLDESRSRLGERLRIHASADDLRALLARPWLEG
LRDHLQFGEPAVVPHPTPYRQVSRVQAKSNPERLRRRLMRRHDLSEEEARKRIPDTVARALDLPFVTLRSQSTGQHFRLF
IRHGPLQVTAEEGGFTCYGLSKGGFVPWF

The query sequence (length=189) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4al5:A 189 189 0.9841 0.9841 0.9841 2.13e-135 6b44:L, 6b45:L, 6b46:L, 6b47:L, 6b48:L, 7ecv:L, 7elm:I, 7elm:S, 7eln:I, 7eln:S, 7eqg:L, 7jzw:C, 7jzx:C, 7jzy:C, 7jzz:C, 6ne0:L, 7t3j:C, 7t3k:C, 7t3k:c, 7t3l:C, 7t3l:c, 7taw:C, 7taw:c, 7tax:C, 5uz9:L, 6vqv:K, 6vqx:J, 6w1x:L, 7we6:I, 7we6:S, 6whi:L, 2xlj:A, 2xlk:A, 2xlk:B, 7yhs:L
2 2xli:A 167 189 0.8730 0.9880 0.8730 2.78e-112 4al6:A, 4al7:A
3 5o6u:B 182 186 0.3598 0.3736 0.3656 1.52e-32
4 7wkp:A 167 160 0.2275 0.2575 0.2687 5.31e-11 8k0k:I, 8k22:H, 8k23:H, 8k23:h, 8k24:h, 8k24:H, 8k27:I, 8k28:I, 8k29:I, 7wwu:I
5 5o7h:B 129 168 0.2540 0.3721 0.2857 5.69e-11
6 5j32:A 369 54 0.1058 0.0542 0.3704 0.60 5j32:B, 5j32:C, 5j32:D, 5j33:A, 5j33:B, 5j33:C, 5j33:H, 5j33:D, 5j33:F, 5j33:E, 5j33:G, 5j34:A, 5j34:B, 5j34:C, 5j34:D
7 3vkz:A 364 77 0.1270 0.0659 0.3117 1.9 3vl2:A, 3vl3:A, 3vl4:A, 3vl6:A, 3vl7:A, 3vmj:A, 3wzv:A, 3wzw:A, 3wzx:A, 3wzy:A
8 6sa8:A 665 50 0.0952 0.0271 0.3600 2.6 7dne:B, 5mfg:C, 5mfg:D, 5mfg:B
9 1vpe:A 398 69 0.1164 0.0553 0.3188 2.7
10 2eo5:A 412 28 0.0529 0.0243 0.3571 3.3
11 2v7y:A 504 41 0.0741 0.0278 0.3415 4.3
12 7reu:B 358 49 0.0741 0.0391 0.2857 5.9 7reu:A
13 7vno:A 452 27 0.0529 0.0221 0.3704 6.4 7vno:B, 7vnt:A, 7vnt:B, 7vo1:A, 7vo1:B
14 4qvt:D 146 46 0.0688 0.0890 0.2826 7.4 2pdo:H, 2pdo:B, 4qvt:A, 4qvt:B, 4qvt:C, 4qvt:E, 4qvt:F, 4qvt:G, 4qvt:H
15 5mcp:E 387 54 0.0952 0.0465 0.3333 7.8 5mcp:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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