Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MALYTPILILGAIAAVFAVVSVGIALVIGPRRFNRSKLEAYECGIDPLPPVAAGLTGQRIPIRYYLIAMLFIVFDIEIVF
LYPWAVAFDSLGLFAVIEMLLFMLTVFVAYAYVWRRGGLNWD

The query sequence (length=122) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8e9g:A 122 122 1.0000 1.0000 1.0000 1.89e-83
2 6l7o:C 121 93 0.3279 0.3306 0.4301 1.80e-21 6l7p:C
3 7a23:J 96 72 0.2131 0.2708 0.3611 1.99e-15 8bef:A, 8bpx:A, 8bq6:A
4 7v2c:j 115 91 0.2295 0.2435 0.3077 4.09e-07 7v2e:j, 7v2h:j, 7v2r:j, 7v31:j, 7v33:j, 7vbl:j, 7vc0:j, 7vxs:j, 7vy9:j, 7vyg:j, 7vys:j, 7vzv:j, 7vzw:j, 7w0r:j, 7w0y:j, 7w1t:j, 7w1v:j, 7w1z:j, 7w20:j, 7w2r:j, 7w2u:j, 7w2y:j, 7w4c:j, 7w4d:j, 7w4e:j, 7w4f:j, 7w4g:j
5 8esz:3 117 93 0.1967 0.2051 0.2581 6.06e-07
6 5xtc:j 115 89 0.2459 0.2609 0.3371 1.59e-05 5xtd:j, 5xth:j, 5xti:j, 5xti:Bj
7 7v2f:j 99 76 0.1803 0.2222 0.2895 0.001 7v2k:j, 7v3m:j, 7vwl:j, 7w2k:j, 7w31:j, 7w32:j, 7w35:j, 7w4j:j
8 7o71:3 128 71 0.1885 0.1797 0.3239 0.012 7o6y:3, 6rfr:3, 6y79:3, 7zkp:3
9 7ekp:A 396 70 0.1885 0.0581 0.3286 1.6 8cau:A, 8cau:B, 8cau:C, 8cau:D, 8cau:E, 8ci1:A, 8ci1:B, 8ci1:C, 8ci1:D, 8ci1:E, 7eki:A, 7eki:B, 7eki:C, 7eki:D, 7eki:E, 7ekp:B, 7ekp:C, 7ekp:D, 7ekp:E, 7ekt:A, 7ekt:E, 7ekt:B, 7ekt:C, 7ekt:D, 7koo:A, 7koo:B, 7koo:C, 7koo:D, 7koo:E, 7koq:A, 7koq:B, 7koq:C, 7koq:D, 7koq:E, 7kox:A, 7kox:B, 7kox:C, 7kox:D, 7kox:E, 8ut1:A, 8ut1:B, 8ut1:C, 8ut1:D, 8ut1:E, 8utb:A, 8utb:B, 8utb:C, 8utb:D, 8utb:E, 8uzj:A, 8uzj:B, 8uzj:E, 8uzj:C, 8uzj:D, 8v80:A, 8v80:B, 8v80:C, 8v80:D, 8v80:E, 8v82:A, 8v82:B, 8v82:E, 8v82:C, 8v82:D, 8v86:A, 8v86:E, 8v86:B, 8v86:C, 8v86:D, 8v88:A, 8v88:B, 8v88:C, 8v88:D, 8v88:E, 8v89:A, 8v89:B, 8v89:C, 8v89:D, 8v89:E, 8v8a:A, 8v8a:B, 8v8a:E, 8v8a:C, 8v8a:D, 8v8c:C, 8v8c:D, 8v8c:E, 8v8d:A, 8v8d:B, 8v8d:E, 8v8d:C, 8v8d:D
10 8v8c:B 374 70 0.1885 0.0615 0.3286 1.6 8v8c:A
11 3rg2:C 613 47 0.1311 0.0261 0.3404 1.6 6iyk:A, 6iyk:B, 6iyl:A, 6iyl:B, 4iz6:A, 4iz6:B, 8k5s:A, 8k5s:B, 8k5t:A, 8k5t:B, 3rg2:A, 3rg2:B, 3rg2:H, 3rg2:D, 3rg2:E, 3rg2:F, 3rg2:I, 3rg2:G, 3rg2:J
12 2loz:A 147 51 0.1230 0.1020 0.2941 3.3

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218