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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MALTFITYIGCGLSSIFLSVTLVTYIAFEKIRRDYPSKILIQLCAALLLLNLIFLLDSWIALYNTRGFCIAVAVFLHYFL
LVSFTWMGLEAFHMYLALVKVFNTYIRKYILKFCIVGWGIPAVVVSIVLTISPDNYGIPNGTPDDFCWINSNVVFYITVV
GYFCVIFLLNVSMFIVVLVQLCRIKKKKQLGIQDLRSIAGLTFLLGITWGFAFFAWGVNVTFMYLFAIFNTLQGFFIFIF
YCAAKENVRKQWR

The query sequence (length=253) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7xkd:R 261 259 0.9960 0.9655 0.9730 0.0 7wui:R, 7xke:R, 7xkf:R
2 7d76:R 265 253 0.3913 0.3736 0.3913 6.13e-48 7d77:R
3 6lpb:R 331 242 0.2490 0.1903 0.2603 4.85e-11
4 8e3y:R 372 228 0.2332 0.1586 0.2588 1.48e-10 8e3z:R, 6vn7:R
5 8e3x:R 362 272 0.2609 0.1823 0.2426 1.83e-10 6m1i:A, 6p9y:R
6 6pb0:R 281 270 0.2688 0.2420 0.2519 9.38e-10 8gtg:A, 8gti:A, 8gtm:A, 4k5y:C
7 6nbh:R 379 200 0.1976 0.1319 0.2500 2.92e-08 8flt:R, 8ha0:R, 8haf:R, 8jr9:R, 6nbf:R, 6nbi:R
8 6pb1:P 281 268 0.2609 0.2349 0.2463 5.05e-08
9 7vvo:R 302 246 0.2372 0.1987 0.2439 6.51e-08 8gw8:R
10 6wzg:R 379 202 0.1897 0.1266 0.2376 1.29e-07 7d3s:R, 6wi9:R
11 7wu4:R 286 267 0.2846 0.2517 0.2697 5.61e-07 7wu3:R, 7wu5:R
12 6fj3:A 562 120 0.1383 0.0623 0.2917 1.18e-05 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
13 6fj3:A 562 34 0.0474 0.0214 0.3529 4.2 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
14 8g2y:R 251 253 0.2648 0.2669 0.2648 1.75e-05
15 7knu:R 341 263 0.2451 0.1818 0.2357 1.88e-04
16 7f16:R 376 203 0.1976 0.1330 0.2463 5.25e-04
17 7vqx:R 361 192 0.1621 0.1136 0.2135 0.001 7wbj:R
18 4z9g:A 421 148 0.1462 0.0879 0.2500 0.001 4k5y:A, 4k5y:B, 4z9g:B, 4z9g:C
19 7tyn:R 373 203 0.1818 0.1233 0.2266 0.004 9auc:R, 8f0j:R, 8f0k:R, 8f2b:R, 6niy:R, 7tyf:R, 7tyo:R, 7tyw:R, 7tyx:R, 7tyy:R, 7tzf:R
20 7dur:R 371 207 0.1897 0.1294 0.2319 0.008 7lll:R, 7lly:R
21 7lci:R 393 216 0.2095 0.1349 0.2454 0.064 7c2e:R, 7duq:R, 7e14:R, 7evm:R, 7fim:R, 8jip:R, 8jir:R, 8jis:R, 7lcj:R, 7lck:R, 5nx2:A, 6orv:RP, 7s15:R, 7s1m:R, 7vbh:R, 7vbi:R, 6vcb:R, 6x19:R, 6x1a:R, 7x8r:R, 7x8s:R, 6xox:R
22 6whc:R 371 200 0.1700 0.1159 0.2150 0.096 8jru:R, 8wg8:R
23 7fin:R 380 224 0.2292 0.1526 0.2589 0.13 7dty:R, 7fiy:R, 7rbt:R, 7vab:R, 8yw4:R
24 6wpw:R 398 205 0.1937 0.1231 0.2390 0.41 8fu6:R, 8jiq:R, 8jit:R, 8jiu:R, 6lmk:R, 6lml:R, 7v35:R
25 2cfa:A 180 58 0.0711 0.1000 0.3103 0.82 2cfa:B, 4fzb:H, 4fzb:J, 4fzb:N
26 8jrv:R 319 194 0.1700 0.1348 0.2216 0.83
27 7vrj:3 65 41 0.0593 0.2308 0.3659 4.1 8wdu:3, 8wdv:3
28 6kjv:B 424 169 0.1462 0.0873 0.2189 8.2 6kjv:A, 6kk1:A, 6kk1:B, 6kk7:A, 6kk7:B, 5vew:A, 5vew:B, 5vex:A, 5vex:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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