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BioLiP
>protein
MALSTIVSQRKQIKRKAPRGFLKRVFKRKKPQLRLEKSGDLLVHLNCLLFVHRLAEESRTNACASKCRVINKEHVLAAAK
VILKKSRG

The query sequence (length=88) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7r5s:W 88 88 1.0000 1.0000 1.0000 7.73e-59 7ywx:W
2 1jfi:B 135 61 0.1932 0.1259 0.2787 0.022
3 6xiv:A 257 43 0.1705 0.0584 0.3488 0.49 6xiu:A, 6xiu:B, 6xiv:B
4 2waz:X 315 30 0.1477 0.0413 0.4333 0.92 1anv:A, 2wb0:X
5 6pqp:A 615 57 0.1932 0.0276 0.2982 3.1 7or0:A, 7or0:B, 7or0:C, 7or0:D, 7or1:A, 7or1:B, 7or1:C, 7or1:D, 6pqo:D, 6pqo:A, 6pqo:B, 6pqo:C, 6pqp:B, 6pqp:D, 6pqp:C, 6pqq:A, 6pqq:D, 6pqq:B, 6pqq:C, 6v9v:A, 6v9v:B, 6v9v:D, 6v9v:C, 6v9w:A, 6v9w:B, 6v9w:D, 6v9w:C
6 2e8y:A 712 36 0.1250 0.0154 0.3056 7.5 2e8y:B, 2e8z:A, 2e8z:B, 2e9b:A, 2e9b:B
7 5hmq:D 624 55 0.1705 0.0240 0.2727 9.8 5hmq:A, 5hmq:B, 5hmq:C, 5hmq:E, 5hmq:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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