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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEIL

The query sequence (length=155) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5loe:A 258 155 0.9935 0.5969 0.9935 2.63e-111 2b18:A, 2gx5:C, 2hgv:A, 5loe:B, 5loe:C, 5loe:D
2 8c7s:A 256 155 0.5419 0.3281 0.5419 2.05e-58 8c7s:B, 5ey0:B, 5ey0:A, 5ey1:A, 5ey1:B
3 8c7u:D 262 159 0.4839 0.2863 0.4717 1.26e-45 8c7u:A, 8c7u:B, 8c7u:C
4 5n0l:A 156 158 0.4774 0.4744 0.4684 1.29e-41 5n0l:B, 5n0l:C, 5n0l:D, 5n0l:E, 5n0l:F
5 4onj:B 333 42 0.0839 0.0390 0.3095 0.78 4onj:A, 4onq:A, 4onq:B
6 6can:A 616 43 0.0774 0.0195 0.2791 1.5 6can:B, 5t88:A, 5t88:B
7 5mga:A 1182 152 0.2258 0.0296 0.2303 3.5
8 4eys:A 343 62 0.1290 0.0583 0.3226 3.6
9 8qpw:F 175 23 0.0710 0.0629 0.4783 4.8
10 7twc:A 416 47 0.0968 0.0361 0.3191 5.6 7twe:A, 7twe:B
11 6pcm:A 793 75 0.1226 0.0240 0.2533 5.8 6pcm:B
12 8btg:B 335 55 0.0839 0.0388 0.2364 6.4 8btg:A, 8btg:C, 8btg:D, 8btg:E, 8btg:F, 8btg:G, 8bv3:A, 8bv3:B, 8bv3:C, 8bv3:D, 8bv3:E
13 3bpt:A 362 60 0.1161 0.0497 0.3000 6.8
14 1ywf:A 241 148 0.1935 0.1245 0.2027 8.5
15 8a1d:A 533 33 0.0839 0.0244 0.3939 8.6 8a1d:B, 8a1d:C, 8a1d:D, 8a1d:E, 8a1d:F, 8a1d:G, 8a1d:H, 8a1d:I, 8a1d:J, 8a1d:K, 8a1d:L, 8a1d:M, 8a1d:N, 8a1d:O, 8a1d:P, 8a1s:A, 8a1s:B, 8a1s:C, 8a1s:D, 8a1s:E, 8a1s:F, 8a1s:G, 8a1s:H, 8a1s:I, 8a1s:J, 8a1s:K, 8a1s:L, 8a1s:M, 8a1s:N, 8a1s:O, 8a1s:P
16 6u0o:B 288 44 0.0968 0.0521 0.3409 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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