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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MALFGYARVSTSQQSLDIQVRALKDAGVKANRIFTDKASGSSSDRKGLDLLRMKVKEGDVILVKKLDRLGRDTADMIQLI
KEFDAQGVSIRFIDDGISTDSYIGKMVVTILSAVAQAERQRILQRTNEGRQEAMAKGVVFGRKRKIDRDAVLNMWQQGLG
ASHISKTMNIARSTVYKVINESN

The query sequence (length=183) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1gdt:A 183 183 0.9672 0.9672 0.9672 4.29e-126 1gdt:B, 2gm4:A, 2gm4:B, 1zr2:A, 1zr2:B, 1zr4:A, 1zr4:B, 1zr4:E, 1zr4:D
2 5cy1:A 183 182 0.7596 0.7596 0.7637 6.66e-98 5cy1:B, 5cy2:A, 5cy2:B, 5cy2:E, 5cy2:F
3 4m6f:A 188 178 0.3552 0.3457 0.3652 2.72e-32
4 2r0q:C 193 195 0.3333 0.3161 0.3128 3.32e-20 2r0q:D, 2r0q:E, 2r0q:F
5 6yxx:EA 532 51 0.0929 0.0320 0.3333 1.6 7aoi:XL, 6yxy:EA
6 4af0:A 395 68 0.0929 0.0430 0.2500 6.3 4af0:B
7 6evj:C 748 76 0.1421 0.0348 0.3421 9.3 6evj:F, 6evk:C, 9f2r:C, 9f37:C, 6fhh:C, 6fhi:C, 5m3h:C, 6szu:C, 6szv:C, 6t0n:C, 6t0r:C, 6t0s:C, 6t0u:C, 6t0v:C, 6tw1:C, 4wsb:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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