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BioLiP
>protein
MAKWRCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERIE

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1yk5:A 53 53 1.0000 1.0000 1.0000 1.13e-34 2pya:A, 1yk4:A, 1yk5:B, 1yk5:C, 1yk5:D
2 5ai2:A 54 53 0.8868 0.8704 0.8868 2.92e-31 5ai3:A, 4ar3:A, 4ar4:A, 4ar5:A, 4ar6:A, 9bkl:A, 9bkp:A, 9bkt:A, 1bq8:A, 1bq9:A, 1brf:A, 1caa:A, 1cad:A, 1iu5:A, 1iu6:A, 4k9f:A, 3kyu:A, 3kyv:A, 3kyw:A, 3kyx:A, 3kyy:A, 5nw3:A, 5ome:A, 3ryg:A, 3rz6:A, 3rzt:A, 3ss2:A, 1vcx:A, 1zrp:A
3 2pvx:B 54 53 0.7736 0.7593 0.7736 2.42e-27 2pvx:A, 2pvx:C, 2pvx:D, 2pvx:E, 2pvx:F, 2pvx:G, 2pvx:H
4 6gps:A 330 53 0.6226 0.1000 0.6226 1.61e-25 6gpx:A
5 2pve:A 52 52 0.6981 0.7115 0.7115 1.75e-25 2pve:B, 2pve:C
6 4xnw:C 350 53 0.6226 0.0943 0.6226 2.05e-25 4xnv:A, 4xnw:A
7 5xpd:A 269 52 0.6038 0.1190 0.6154 3.94e-25
8 5vbl:B 353 53 0.6226 0.0935 0.6226 1.22e-24 6knm:B, 7sus:A
9 6li2:A 347 53 0.6226 0.0951 0.6226 1.28e-24
10 6bd4:A 379 53 0.6226 0.0871 0.6226 1.35e-24
11 6me8:A 449 53 0.6226 0.0735 0.6226 1.92e-24 6me6:A, 6me7:A, 6me9:A
12 6iiv:A 461 53 0.6226 0.0716 0.6226 2.87e-24 1b13:A, 1b2j:A, 1b2o:A, 1b2o:B, 1be7:A, 1bfy:A, 1c09:A, 1c09:B, 1c09:C, 1fhh:A, 1fhm:A, 6iiu:A, 1irn:A, 1iro:A, 1r0h:A, 4rxn:A, 5rxn:A, 1smm:A, 1smu:A, 1smw:A, 1t9o:A, 1t9o:B, 1t9o:C, 1t9p:A, 1t9p:B, 1t9p:C, 1t9q:A
13 6ln2:A 437 53 0.6226 0.0755 0.6226 2.21e-23 3c59:A, 3c5t:A, 3iol:A, 5otu:A, 5otu:C, 5otv:C, 5otv:A, 5otw:C, 5otw:A, 5otx:A, 5otx:C, 4zgm:A
14 2kkd:A 52 50 0.6792 0.6923 0.7200 3.52e-23 2ql0:A, 1rb9:A, 1rdv:A, 2rdv:A, 2rdv:B, 2rdv:C, 7rxn:A, 8rxn:A
15 7f1t:A 423 53 0.6226 0.0780 0.6226 2.12e-22 6akx:A, 6akx:B, 6aky:A, 5d65:B, 5d65:A, 5d65:D, 4mbs:A, 4mbs:B, 5uiw:A
16 2dsx:A 52 51 0.6226 0.6346 0.6471 4.11e-20 1rdg:A
17 2v3b:B 53 53 0.5849 0.5849 0.5849 5.00e-18
18 7e0l:A 491 48 0.5283 0.0570 0.5833 8.76e-17 7e0l:B, 7e0l:K, 7e0l:M, 7wsx:A, 7wsx:B
19 1s24:A 56 51 0.5472 0.5179 0.5686 3.64e-16
20 2kn9:A 81 50 0.5283 0.3457 0.5600 1.86e-15 7a9a:A, 7a9a:B, 7a9a:C, 7a9a:D, 7a9a:E, 7a9a:F, 7a9a:G, 7a9a:H
21 8ito:B 74 51 0.5094 0.3649 0.5294 2.40e-14 8ito:A
22 1dx8:A 70 52 0.4717 0.3571 0.4808 6.02e-14 1h7v:A
23 8f6t:A 428 51 0.4340 0.0537 0.4510 3.53e-11
24 2ms3:A 57 50 0.3396 0.3158 0.3600 2.37e-09
25 6rxn:A 45 50 0.4151 0.4889 0.4400 2.55e-09
26 1b71:A 191 48 0.3208 0.0890 0.3542 8.43e-05 1dvb:A, 1jyb:A, 1lkm:A, 1lko:A, 1lkp:A, 1qyb:A, 1ryt:A, 1s2z:A, 1s30:A
27 4tpu:A 169 49 0.3774 0.1183 0.4082 8.05e-04
28 2hr5:A 170 44 0.2830 0.0882 0.3409 0.074 2hr5:B, 3mps:A, 3mps:B, 3mps:D, 3mps:I, 3mps:F, 3mps:K, 3mps:G, 3mps:H, 1nnq:A, 1nnq:B, 3pwf:A, 3pwf:B, 3pza:A, 3pza:B, 3qvd:A, 3qvd:B, 3qvd:C, 3qvd:D, 3qvd:E, 3qvd:F, 3qvd:G, 3qvd:H
29 2d1g:A 481 22 0.1887 0.0208 0.4545 0.59 2d1g:B
30 1yux:B 202 44 0.2830 0.0743 0.3409 0.85 1yux:A, 1yuz:A, 1yuz:B, 1yv1:A, 1yv1:B
31 3i74:A 642 24 0.1698 0.0140 0.3750 0.90 3i74:B
32 3npc:A 357 26 0.2453 0.0364 0.5000 0.91 3e7o:A, 3e7o:B, 8elc:A, 7n8t:A, 3npc:B
33 7d79:D 295 30 0.2453 0.0441 0.4333 2.9 7d79:B
34 3m8u:A 508 16 0.1698 0.0177 0.5625 4.7
35 8fac:A 1377 20 0.1698 0.0065 0.4500 4.8 8e04:A
36 3igy:B 549 27 0.1698 0.0164 0.3333 5.3 3igz:B
37 8e05:A 1749 20 0.1698 0.0051 0.4500 5.4 8e05:B, 8e06:A
38 2lcq:A 161 18 0.1887 0.0621 0.5556 6.5
39 7aih:T 55 28 0.1698 0.1636 0.3214 8.0 7am2:T, 7ane:T, 7aoi:A5, 6hiv:A5, 6hix:A5, 6yxx:A5, 6yxy:A5
40 5ui3:C 306 17 0.1509 0.0261 0.4706 9.4 5ui3:D, 5ui3:A, 5ui3:B
41 6ghs:A 285 45 0.2830 0.0526 0.3333 9.5
42 8a9c:B 520 23 0.2075 0.0212 0.4783 9.5
43 8bzx:B 568 29 0.2075 0.0194 0.3793 9.6
44 6itd:A 328 20 0.1698 0.0274 0.4500 9.6 6k36:A, 6k37:A, 6k38:A
45 2yre:A 100 46 0.2075 0.1100 0.2391 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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