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BioLiP
>protein
MAIKFNIKESKILNGVYIITPNKFSDLRGDIWTAFTDEYLSNLVPNGIKFKHDKFINSHFNVLRGIHGDVKTYKLVTCVY
GEVHQVVVDCRKDSPTYLKWEKFIISPRNQQLILLPPNMGNSHYVSSKEAVYYYKLAYKGEYLDAPDQFTYAWNDKRIAI
DWPTNSPILSERDILAMN

The query sequence (length=178) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8dco:B 181 178 1.0000 0.9834 1.0000 1.25e-133 8db5:A, 8db5:B, 8db5:C, 8db5:D, 8db5:E, 8db5:F, 8db5:G, 8db5:H, 8dco:A
2 7m15:D 181 176 0.8876 0.8729 0.8977 4.78e-120 7an4:A, 7an4:B, 7an4:D, 7m14:A, 7m14:B, 7m14:C, 7m14:D, 7m14:E, 7m14:F, 7m15:A, 7m15:B, 7m15:C, 7m15:E, 7m15:F
3 8dcl:A 185 175 0.7697 0.7405 0.7829 4.31e-104 7anj:A, 7anj:B, 8dak:A, 8dak:B, 8dcl:B
4 1dzt:A 183 165 0.3034 0.2951 0.3273 4.12e-24 1dzt:B
5 3ryk:A 175 174 0.2865 0.2914 0.2931 3.17e-20 3ryk:B
6 6ndr:A 188 162 0.2978 0.2819 0.3272 3.68e-20 6ndr:B
7 2ixh:A 184 161 0.2697 0.2609 0.2981 8.96e-20 2ixh:B, 2ixi:B, 2ixi:A, 2ixk:A, 2ixk:B
8 6c46:A 183 166 0.2921 0.2842 0.3133 1.09e-18 6c46:D
9 1epz:A 183 170 0.3034 0.2951 0.3176 3.11e-16
10 7pvi:AAA 199 162 0.2809 0.2513 0.3086 3.51e-16 7pvi:BBB, 7pwb:AAA, 7pwb:BBB
11 5buv:A 174 177 0.3090 0.3161 0.3107 4.94e-14 5buv:B
12 2ixc:A 198 168 0.2640 0.2374 0.2798 6.03e-14 2ixc:B, 2ixc:C, 2ixc:D
13 1oi6:A 202 174 0.2640 0.2327 0.2701 5.15e-11 1oi6:B
14 7pwh:AAA 203 165 0.2640 0.2315 0.2848 9.76e-10
15 4hn1:C 201 165 0.2472 0.2189 0.2667 5.71e-06 4hmz:A, 4hmz:B, 4hmz:C, 4hmz:D, 4hn1:A, 4hn1:B, 4hn1:D
16 1vli:A 358 114 0.1517 0.0754 0.2368 0.12
17 8auv:C 117 63 0.1067 0.1624 0.3016 0.97 8b2l:C1
18 7cp7:A 430 87 0.1180 0.0488 0.2414 2.8 7cp6:A, 7cp6:B
19 7rml:A 281 81 0.1292 0.0819 0.2840 3.2 7rml:B, 7rml:C
20 7pmk:Q 766 31 0.0674 0.0157 0.3871 7.8 7pmn:Q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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