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BioLiP
>protein
MAIIKREWLEAATDAHKKLGWKAKGAVVSAHDPSDTAKGYASRHGSVVKRIAEGLLMDINEGADWATSLAIEDGADHYLW
DGDGVGAGLRRQTTEAFSGKKITATMFKGSESPFDEDAPYQRTIGDVFRNKRAQFYYALADRLYLTYRAVVHGEYADPDD
MLSFDKEAIGEKMLEKLFAELTQIQRKFNNNGKLELMTAVEMKQKLGIPSPNLADALMMCMHCP

The query sequence (length=224) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4iee:A 452 230 0.9955 0.4934 0.9696 8.29e-162 5c12:A, 5c15:A, 5c2d:A, 5c2f:A, 4iei:A, 4ife:A
2 8dkr:B 248 241 0.3259 0.2944 0.3029 2.70e-20 8dkr:A
3 4b4d:A 256 56 0.0938 0.0820 0.3750 0.029
4 1a8p:A 257 59 0.0848 0.0739 0.3220 1.2
5 8dek:B 441 108 0.1250 0.0635 0.2593 2.2 8dek:A, 8df2:A, 8df2:B, 8df2:C, 8df2:D
6 3kgy:A 218 121 0.1205 0.1239 0.2231 5.7 3kgy:B
7 1wy9:A 111 26 0.0446 0.0901 0.3846 5.8
8 4ac5:M 323 44 0.0625 0.0433 0.3182 8.0 4cas:C, 3d38:M, 1dxr:M, 6et5:M, 3g7f:M, 2i5n:M, 2jbl:M, 5m7j:C, 5m7k:C, 5m7l:C, 5nj4:M, 5o4c:M, 5o64:M, 1prc:M, 2prc:M, 3prc:M, 5prc:M, 6prc:M, 7prc:M, 7q7p:MMM, 7q7q:MMM, 1r2c:M, 3t6d:M, 3t6e:M, 1vrn:M, 2wjm:M, 2wjn:M, 2x5u:M, 2x5v:M, 6zhw:M, 6zi4:M, 6zi5:M, 6zi6:M, 6zi9:M, 6zia:M, 6zid:M

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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