Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MAHLLHIDSSISGPASVSRPLTARAAANWKAAHPDGTVTYRDLGASPLPHINTASALAGVTPAAERRPEQSAAWAVSELV
VEEVREATTIILGLPLYNYGPPSSVKAWVDYLIAPGLSLDAHTRAPLLGRRELLVLATRGGGFGPGTPREGWDHAQPWLP
HGLAMTGLEPEFITTELTLAPVTPGMEHLVPLAKESRAAAERAIDQRWVT

The query sequence (length=210) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7awv:A 210 210 1.0000 1.0000 1.0000 8.53e-150 7awv:B
2 4c0w:A 200 140 0.2429 0.2550 0.3643 3.54e-24 4c0x:A, 4c14:A
3 3r6w:A 211 176 0.2810 0.2796 0.3352 4.65e-22 3keg:A, 3keg:B, 3lt5:A, 3lt5:B, 4n65:A, 4n65:B, 4n9q:A, 4n9q:B, 3r6w:B, 2v9c:A, 2v9c:B
4 1t5b:A 199 179 0.2429 0.2563 0.2849 7.09e-16 1t5b:B
5 4ese:A 193 179 0.2238 0.2435 0.2626 3.42e-15
6 7n2x:A 201 209 0.2429 0.2537 0.2440 7.79e-13 2d5i:A, 1v4b:A, 2z98:A, 2z9b:A, 2z9c:A, 2z9d:A, 2z9d:B
7 3w77:A 207 136 0.1905 0.1932 0.2941 1.01e-12 3w77:B
8 6dxp:A 206 181 0.2571 0.2621 0.2983 1.35e-10 6dxp:C, 6dxp:B, 6dxp:D, 8h4j:A, 8h4j:B, 8h4j:C, 8h4j:D, 8h4j:E, 8h4j:F, 8h4j:G, 8h4j:H, 7n2w:A, 7n2w:B, 7n2w:C, 7n2w:D
9 4m0c:A 212 140 0.1667 0.1651 0.2500 6.29e-05 4m0c:B
10 6qu0:A 211 126 0.1571 0.1564 0.2619 8.45e-05 6qu0:B
11 4fgl:D 233 62 0.0952 0.0858 0.3226 1.51e-04 5buc:A, 5buc:B, 2bzs:A, 2bzs:B, 4fgj:A, 4fgj:B, 4fgk:A, 4fgk:B, 4fgl:A, 4fgl:B, 4fgl:C, 3fw1:A, 3g5m:A, 3g5m:B, 3gam:A, 3gam:B, 4gqi:A, 4gqi:B, 4gr9:A, 4gr9:B, 5lbt:A, 5lbt:B, 5lbu:A, 5lbu:B, 5lbw:A, 5lbw:B, 5lby:A, 5lby:B, 5lbz:A, 5lbz:B, 3nfr:A, 3nfr:B, 3nhf:A, 3nhf:B, 3nhj:A, 3nhj:B, 3nhk:A, 3nhk:B, 3nhl:A, 3nhl:B, 3nhp:A, 3nhp:B, 3nhr:A, 3nhr:B, 3nhs:A, 3nhs:B, 3nhu:A, 3nhu:B, 3nhw:A, 3nhw:B, 3nhy:A, 3nhy:B, 3o2n:A, 3o2n:B, 7o4d:A, 7o4d:B, 3o73:A, 3o73:B, 3ovm:A, 3ovm:B, 3owh:A, 3owh:B, 3owx:A, 3owx:B, 3ox1:A, 3ox1:B, 3ox2:A, 3ox2:B, 3ox3:A, 3ox3:B, 2qmy:A, 2qmy:B, 2qmz:A, 2qmz:B, 4qod:A, 4qod:B, 4qoe:A, 4qoe:B, 4qof:A, 4qof:B, 4qog:A, 4qog:B, 4qoh:A, 4qoh:B, 4qoi:A, 4qoi:B, 4qoj:A, 4qoj:B, 1qr2:A, 1qr2:B, 2qr2:A, 2qr2:B, 2qwx:A, 2qwx:B, 2qx4:A, 2qx4:B, 2qx6:A, 2qx6:B, 2qx8:A, 2qx8:B, 2qx9:A, 2qx9:B, 1sg0:A, 1sg0:B, 3te7:A, 3te7:B, 3tem:A, 3tem:B, 3tzb:A, 3tzb:B, 3tzb:C, 3tzb:D, 4u7f:A, 4u7f:B, 4u7g:A, 4u7g:B, 4u7h:A, 4u7h:B, 3uxe:A, 3uxe:B, 3uxh:A, 3uxh:B, 4xdg:A, 4xdg:B, 4xdh:A, 4xdh:B, 1xi2:A, 1xi2:B, 4zvk:A, 4zvk:B, 4zvl:A, 4zvl:B, 4zvm:A, 4zvm:B, 4zvn:A, 4zvn:B, 1zx1:A, 1zx1:B
12 4gi5:B 261 131 0.1524 0.1226 0.2443 0.002 4gi5:A
13 2hpv:A 207 153 0.1571 0.1594 0.2157 0.005 2hpv:B, 2hpv:C, 2hpv:D
14 3w78:A 210 160 0.1857 0.1857 0.2437 0.014 3w78:B, 3w78:D, 3w78:C, 3w79:A, 3w79:B, 3w79:C, 3w79:D, 3w7a:A, 3w7a:B, 3w7a:C, 3w7a:D
15 3svl:B 182 81 0.1048 0.1209 0.2716 0.034 3svl:A
16 1dxq:A 273 64 0.0714 0.0549 0.2344 0.21 1dxq:C, 1dxq:B, 1dxq:D, 1qrd:A, 1qrd:B
17 6jxn:B 212 154 0.1476 0.1462 0.2013 0.65 6jxn:A, 6jxn:C, 6jxn:D, 6jxs:A, 6jxs:B, 6jxs:C, 6jxs:D
18 3s2u:A 331 29 0.0905 0.0574 0.6552 0.89
19 5lva:A 174 57 0.0762 0.0920 0.2807 1.3 5lva:B
20 5voo:A 282 35 0.0762 0.0567 0.4571 2.2 5voo:B, 5voo:C, 5voo:D, 5voo:E, 5voo:F, 5vop:A, 5vop:B
21 8qzw:A 359 68 0.1000 0.0585 0.3088 2.3 8qzx:A, 8qzx:B, 8qzx:C, 8qzx:D
22 1f9c:A 360 37 0.0810 0.0472 0.4595 3.5 1f9c:B, 1muc:A, 1muc:B, 2muc:A, 2muc:B, 3muc:A, 3muc:B
23 3sju:A 255 54 0.1000 0.0824 0.3889 3.5 3sju:B
24 4q0m:A 327 109 0.1429 0.0917 0.2752 3.8 5b5u:A, 5b74:B, 4nje:A
25 6g4r:B 322 58 0.1000 0.0652 0.3621 4.4 6g1b:J, 6g4r:E
26 3gfr:D 172 53 0.0857 0.1047 0.3396 5.7 3gfq:A, 3gfq:B, 3gfq:C, 3gfq:D, 3gfr:A, 3gfr:B, 3gfr:C, 3gfs:A, 3gfs:B, 3gfs:C, 3gfs:D, 3gfs:E, 3gfs:F, 3gfs:G, 3gfs:H, 3gfs:I, 3gfs:J, 3gfs:K, 3gfs:L, 2gsw:A, 2gsw:B, 2gsw:C, 2gsw:D, 1nni:1
27 8g3h:A 841 35 0.0714 0.0178 0.4286 7.0
28 5ea2:C 276 64 0.0619 0.0471 0.2031 8.2 5a4k:A, 5a4k:B, 5a4k:C, 5a4k:D, 8c9j:A, 8c9j:B, 8c9j:C, 8c9j:D, 4cet:A, 4cf6:A, 4cf6:B, 1d4a:A, 1d4a:B, 1d4a:D, 1d4a:C, 1dxo:A, 1dxo:C, 1dxo:B, 1dxo:D, 5ea2:A, 5ea2:E, 5ea2:G, 5eai:A, 5eai:B, 5eai:C, 5eai:D, 5eai:E, 5eai:F, 5eai:G, 5eai:H, 5eai:I, 5eai:J, 5eai:K, 5eai:L, 5eai:M, 5eai:N, 2f1o:A, 2f1o:C, 2f1o:B, 2f1o:D, 2f1o:E, 2f1o:F, 2f1o:G, 2f1o:H, 5fuq:A, 5fuq:B, 6fy4:A, 6fy4:B, 6fy4:C, 6fy4:D, 1gg5:A, 1gg5:C, 1gg5:B, 1gg5:D, 1h66:A, 1h66:C, 1h66:B, 1h66:D, 1h69:A, 1h69:C, 1h69:B, 1h69:D, 3jsx:A, 3jsx:B, 3jsx:C, 3jsx:D, 3jsx:E, 3jsx:G, 3jsx:F, 3jsx:H, 1kbo:A, 1kbo:C, 1kbo:B, 1kbo:D, 1kbq:A, 1kbq:C, 1kbq:B, 1kbq:D, 6llc:A, 6llc:D, 6llc:B, 6llc:F, 6llc:C, 6llc:E, 6llc:G, 6llc:H, 6llc:I, 6llc:J, 6llc:K, 6llc:L, 8ok0:A, 8ok0:D, 8ok0:B, 8ok0:C, 8pqn:A, 8pqn:B, 8pqn:C, 8pqn:D, 1qbg:A, 1qbg:B, 1qbg:C, 1qbg:D, 8rfm:A, 8rfm:B, 8rfm:C, 8rfm:D, 8rfn:A, 8rfn:B, 8rfn:C, 8rfn:D
29 3k5s:A 217 22 0.0524 0.0507 0.5000 8.2 3k5s:B, 3k6i:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218