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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENF
KLTMVKRNNQTIFEQTINDLTF

The query sequence (length=102) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ghf:A 102 102 1.0000 1.0000 1.0000 5.46e-74
2 2yt9:A 95 61 0.1569 0.1684 0.2623 0.63
3 1klr:A 30 26 0.0784 0.2667 0.3077 0.64 1kls:A, 1xrz:A, 5znf:A, 7znf:A
4 3lvt:A 833 34 0.1275 0.0156 0.3824 0.94
5 7xt2:B 388 29 0.1275 0.0335 0.4483 1.0 7xt2:A
6 7xyz:B 456 29 0.1275 0.0285 0.4483 1.0 7xv2:A, 7xyy:A, 7xyy:B, 7xyz:A, 7xyz:C, 7xyz:D, 7xz0:A, 7xz0:B, 7xz1:A, 7xz1:B, 7xz2:A, 7xz2:B, 7xz2:C, 7xz2:D
7 7sjr:A 911 25 0.0980 0.0110 0.4000 1.8 6ppj:A
8 7ysf:A 113 46 0.1275 0.1150 0.2826 3.4
9 8fjl:D 1138 25 0.1275 0.0114 0.5200 4.3 8fjk:E, 8fjk:G, 8fjk:I, 8fjk:K, 8fjl:E, 8fjl:G, 8fjl:I, 8fjl:K, 6m99:C
10 7lw7:A 277 26 0.0882 0.0325 0.3462 4.5 7lw8:A, 7lw9:A, 7lwa:A
11 7b9v:N 264 50 0.1275 0.0492 0.2600 4.6
12 7dco:Q 292 50 0.1275 0.0445 0.2600 4.7 6j6g:Q, 6j6h:Q, 6j6n:Q, 6j6q:Q
13 2i13:B 144 32 0.1275 0.0903 0.4062 4.7
14 5mps:N 227 50 0.1275 0.0573 0.2600 4.9 5lj3:N, 5lj5:N, 5mq0:N
15 6exn:N 242 50 0.1275 0.0537 0.2600 5.2 6bk8:F
16 7ajt:JA 812 46 0.1373 0.0172 0.3043 6.2 7d63:RL, 6ke6:RL, 6lqp:RL, 6lqq:RL, 6lqr:RL, 6lqu:RL, 6lqv:RL, 7suk:LX, 6zqb:JA, 6zqc:JA
17 5y88:M 182 48 0.1275 0.0714 0.2708 6.2
18 5gm6:Q 185 48 0.1275 0.0703 0.2708 7.7 5gmk:Q, 5wsg:Q, 5ylz:M
19 8f2m:D 434 39 0.1275 0.0300 0.3333 7.9
20 6m5u:A 585 45 0.1471 0.0256 0.3333 8.0 4iox:C, 6m5v:A
21 2y6o:A 263 34 0.1078 0.0418 0.3235 9.7 2xyu:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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