Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
MAGCVVIVGSGVIGRSWAMLFASGGFQVKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSVEEQLSLISGCPNIQEA
VEGAMHIQECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAGLVHVKQCIVAHPVNPPYYIPLVELVPHPET
APTTVDRTHALMKKIGQCPMRVQKEVAGFVLNRLQYAIISEAWRLVEEGIVSPSDLDLVMSEGLGMRYAFIGPLETMHLN
AEGMLSYCDRYSEGIKHVLQTFGPIPEFSRATAEKVNQDMCMKVPDDPEHLAARRQWRDECLMRLAKLKSQV

The query sequence (length=312) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3f3s:A 312 312 1.0000 1.0000 1.0000 0.0 3f3s:B
2 3adp:A 310 310 0.8301 0.8355 0.8355 0.0
3 4om8:A 309 235 0.2532 0.2557 0.3362 2.27e-39 4om8:B
4 6aa8:E 281 231 0.2500 0.2776 0.3377 1.83e-28 6aa8:F
5 4kug:A 282 230 0.2212 0.2447 0.3000 2.20e-25 4kug:B, 4kug:C, 4kug:D, 4kuh:A, 4kuh:B, 4kuh:C, 4kuh:D, 4kuh:E, 4kuh:F, 4kuh:G, 4kuh:H
6 4dyd:A 283 241 0.2212 0.2438 0.2863 1.98e-22 4e13:A
7 4pzd:A 283 231 0.2308 0.2544 0.3117 1.16e-21 4pzd:B, 4pzd:C, 4pzd:D, 4pzd:E, 4pzd:F, 4pzd:G, 4pzd:H, 4pzd:I, 4pze:A, 4pze:B, 4pze:C, 4pze:D, 4pze:G, 4pze:E, 4pze:F, 4pze:H, 4pze:I
8 1f12:A 293 237 0.2147 0.2287 0.2827 1.61e-20 1f0y:A, 1f0y:B, 1f17:A, 1f17:B, 3had:A, 3had:B, 2hdh:A, 2hdh:B, 3hdh:A, 3hdh:B, 3hdh:C, 1il0:A, 1il0:B, 1lsj:A, 1lsj:B, 1lso:A, 1lso:B, 1m75:A, 1m75:B, 1m76:A, 1m76:B
9 6ysw:A 707 188 0.2019 0.0891 0.3351 5.59e-18
10 3zwa:A 727 235 0.2083 0.0894 0.2766 6.07e-16 5mgb:A, 5mgb:B, 5omo:A, 5omo:B, 2x58:A, 2x58:B, 6z5f:AAA, 6z5f:BBB, 6z5o:AAA, 6z5v:AAA, 6z5v:BBB, 6zib:AAA, 6zib:BBB, 6zic:AAA, 6zic:BBB, 3zw9:A, 3zw9:B, 3zwa:B, 3zwb:A, 3zwb:B, 3zwc:A, 3zwc:B
11 8oqs:B 735 221 0.1891 0.0803 0.2670 1.57e-14 4b3i:A, 4b3i:B, 4b3j:A, 4b3j:B, 7o4s:A, 7o4s:B, 7o4t:A, 7o4t:B, 7o4u:A, 7o4u:B, 7o4v:B, 7o4v:A, 8opu:A, 8opu:B, 8opv:A, 8opv:B, 8oql:A, 8oql:B, 8oqn:A, 8oqn:B, 8oqo:A, 8oqo:B, 8oqp:A, 8oqp:B, 8oqq:A, 8oqq:B, 8oqr:A, 8oqr:B, 8oqs:A, 8oqt:B, 8oqt:A, 8oqu:A, 8oqu:B, 8oqv:A, 8oqv:B, 8pf8:A, 8pf8:B
12 3k6j:A 430 243 0.1827 0.1326 0.2346 1.24e-13
13 3k6j:A 430 46 0.0481 0.0349 0.3261 1.5
14 6iun:B 692 213 0.1731 0.0780 0.2535 8.29e-12 6iun:A
15 1wdl:A 715 192 0.1635 0.0713 0.2656 7.85e-10 2d3t:A, 2d3t:B, 1wdk:A, 1wdk:B, 1wdl:B, 1wdm:A, 1wdm:B
16 6tnm:A 719 139 0.1154 0.0501 0.2590 4.65e-08
17 6tnm:A 719 100 0.0769 0.0334 0.2400 4.6
18 4j34:B 390 60 0.0641 0.0513 0.3333 0.012 4j2w:A, 4j2w:B, 4j31:A, 4j31:B, 4j33:A, 4j33:B, 4j34:A, 4j36:A, 4j36:B, 5x6r:A, 5x6r:B
19 4r16:A 418 35 0.0449 0.0335 0.4000 0.30 4r16:B
20 1ahi:A 255 70 0.0641 0.0784 0.2857 0.33 1ahh:A, 1ahh:B, 1ahi:B, 1fmc:A, 1fmc:B
21 3bg6:A 577 29 0.0449 0.0243 0.4828 0.58 3bg6:B, 3bg6:C, 3bg6:D, 3bg6:E, 3bg6:F, 3bg6:G, 3bg6:H, 3bg7:A, 3bg7:B, 3bg7:C, 3bg7:D, 3bg7:E, 3bg7:F, 3bg7:G, 3bg7:H, 3bly:A, 2f5v:A, 2f6c:A, 3fdy:A, 2igk:A, 2igk:B, 2igk:C, 2igk:D, 2igk:E, 2igk:F, 2igk:G, 2igk:H, 2igm:A, 2igm:B, 2igm:D, 2igm:C, 2igm:E, 2igm:F, 2igm:G, 2igm:H, 2ign:A, 2ign:B, 2ign:D, 2ign:C, 2ign:E, 2ign:F, 2ign:H, 2ign:G, 2igo:A, 2igo:B, 2igo:D, 2igo:C, 2igo:E, 2igo:F, 2igo:H, 2igo:G, 3k4b:A, 3k4c:A, 3k4c:B, 3k4c:C, 3k4c:D, 3k4j:A, 3k4k:A, 3k4l:A, 3k4l:B, 3k4m:A, 3k4m:B, 3k4m:C, 3k4m:D, 3k4m:E, 3k4m:F, 3k4m:G, 3k4m:H, 3k4n:A, 3k4n:B, 3lsh:A, 3lsh:B, 3lsh:C, 3lsh:D, 3lsi:A, 3lsi:B, 3lsk:A, 3lsk:B, 3lsk:C, 3lsk:D, 3lsm:A, 3lsm:B, 4moe:A, 4moe:B, 4moe:C, 4moe:D, 4mof:A, 4mog:A, 4moh:A, 4moi:A, 4moi:B, 4moj:A, 4moj:B, 4moj:C, 4moj:D, 4mok:A, 4mok:B, 4mok:C, 4mok:D, 4mol:A, 4mol:B, 4mol:C, 4mol:D, 4mom:A, 4mom:B, 4mom:C, 4mom:D, 4moo:A, 4mop:A, 4mop:B, 4mop:C, 4mop:D, 4moq:A, 4moq:B, 4mor:A, 4mor:B, 4mor:C, 4mor:D, 4mos:A, 3pl8:A, 1tt0:A, 1tt0:B, 1tt0:C, 1tt0:D, 1tzl:A, 1tzl:B, 1tzl:C, 1tzl:D, 1tzl:E, 1tzl:F, 1tzl:G, 1tzl:H
22 7fgp:A 379 31 0.0449 0.0369 0.4516 2.0 7fgp:B
23 7kws:A 390 126 0.0994 0.0795 0.2460 2.4 7kws:B
24 6jkh:A 212 32 0.0385 0.0566 0.3750 2.8 6jkh:B
25 3ggg:D 293 41 0.0513 0.0546 0.3902 3.2 2g5c:A, 2g5c:B, 2g5c:C, 2g5c:D, 3ggg:A, 3ggg:B, 3ggg:C, 3ggo:A, 3ggo:B, 3ggo:D, 3ggo:C, 3ggp:A, 3ggp:B, 3ggp:D, 3ggp:C
26 3hdi:A 414 76 0.0705 0.0531 0.2895 3.6 3hdi:B
27 3ojl:A 418 78 0.0769 0.0574 0.3077 4.5 3ojl:B, 3ojo:A, 3ojo:B
28 1c0i:A 363 26 0.0417 0.0358 0.5000 5.0 1c0k:A, 1c0l:A, 1c0p:A
29 7rkh:D 559 54 0.0481 0.0268 0.2778 5.1 7rkh:C, 7rkh:A, 7rkh:B, 7rl0:A, 7rl0:D, 7rl0:B, 7rl0:C, 7rl0:E, 7rl0:H, 7rl0:F, 7rl0:G, 7rl0:W, 7rl0:Z, 7rl0:X, 7rl0:Y, 7rl5:A, 7rl5:B, 7rl5:D, 7rl5:C, 7rl5:E, 7rl5:M, 7rl5:R, 7rl5:P, 7rl5:L, 7rl5:O, 7rl5:S, 7rl5:Q, 7rnl:B, 7rnl:C, 7rnl:D, 7rnl:A, 7rnl:H, 7rnl:K, 7rnl:N, 7rnl:E, 7rnl:I, 7rnl:L, 7rnl:O, 7rnl:F, 7rnl:J, 7rnl:M, 7rnl:P, 7rnl:G, 7rnr:A, 7rnr:B, 7rnr:F, 7rnr:E, 7rnr:Q, 7rnr:S, 7rnr:a, 7rnr:Y, 7rnr:I, 7rnr:J, 7rnr:N, 7rnr:M, 7rnr:R, 7rnr:T, 7rnr:b, 7rnr:Z, 7rnr:g, 7rnr:h, 7rnr:l, 7rnr:k
30 5fn0:A 455 28 0.0385 0.0264 0.4286 6.1 5fn0:B, 5fn0:C, 5fn0:D, 6fox:A, 6fox:B, 6foy:A, 6foy:B, 6foz:A, 6foz:B, 6fp0:A, 6fp0:B, 6fp1:A, 6fp1:B, 6fph:A, 6fph:B, 5mzc:A, 5mzc:B, 5mzi:A, 5mzi:B, 5mzk:A, 5mzk:B, 5n7t:A, 5n7t:B, 5na5:A, 5na5:B, 5nab:A, 5nab:B, 5nae:A, 5nae:B, 5nag:A, 5nag:B, 5nah:A, 5nah:B, 5nak:A, 5nak:B, 5x6p:A, 5x6p:B, 5x6q:A, 5y66:A, 5y77:A, 5y77:B, 5y7a:A
31 6vfs:A 295 159 0.1186 0.1254 0.2327 6.3
32 1f8w:A 447 29 0.0449 0.0313 0.4828 6.4 1joa:A, 1nhp:A, 1nhq:A, 1nhr:A, 1nhs:A, 1npx:A, 2npx:A
33 7zel:A 827 76 0.0449 0.0169 0.1842 8.2 7zel:B, 7zep:B, 7zes:A, 7zes:B
34 5uyy:A 373 44 0.0513 0.0429 0.3636 8.5 7mqv:A, 7mqv:B, 7mqv:C, 7mqv:D, 6u60:A, 6u60:B, 5uyy:B, 5uyy:C, 5uyy:D
35 6k1r:A 305 85 0.0801 0.0820 0.2941 8.6 6k1r:B, 6k1r:C, 5zix:A, 5zix:B
36 2ji2:A 126 131 0.1058 0.2619 0.2519 9.4 2ji1:A, 2ji1:B, 2ji1:C, 2ji1:D, 2ji2:B, 2ji2:C, 2ji2:D, 2ji3:A, 2ji3:B, 2ji3:C, 2ji3:D, 1vzg:A, 1vzg:B, 1vzh:A, 1vzh:B, 1vzi:A, 1vzi:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218