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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MAFRKSNVYLSLVNSYIIDSPQPSSINYWWNMGSLLGLCLVIQIVTGIFMAMHYSSNIELAFSSVEHIMRDVHNGYILRY
LHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITNLFSAIPFVGND
IVSWLWGGFSVSNPTIQRFFALHYLVPFIIAAMVIMHLMALHIHGSSNPLGITGNLDRIPMHSYFIFKDLVTVFLFMLIL
ALFVFYSPNTLGHPDNYIPGNPLVTPASIVPEWYLLPFYAILRSIPDKLLGVITMFAAILVLLVLPFTDRSVVRGNTFKV
LSKFFFFIFVFNFVLLGQIGACHVEVPYVLMGQIATFIYFAYFLIIVPVISTIENVLFYIGRVNK

The query sequence (length=385) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3cx5:C 385 385 1.0000 1.0000 1.0000 0.0 3cx5:N, 3cxh:C, 3cxh:N, 8e7s:J, 8e7s:j, 8ec0:J, 8ec0:j, 1ezv:C, 6giq:C, 6giq:N, 6hu9:C, 6hu9:N, 2ibz:C, 1kb9:C, 1kyo:C, 1kyo:N, 1p84:C, 4pd4:C, 6t0b:C, 6t0b:N, 6t15:C, 6t15:N, 6ymx:C, 6ymx:N
2 7rje:K 384 381 0.7662 0.7682 0.7743 0.0 7rja:K, 7rja:T, 7rjb:K, 7rjc:K, 7rjd:K, 7rje:T
3 8ab6:C 383 383 0.6468 0.6501 0.6501 0.0 8ab6:N, 8ab7:C, 8ab7:N, 8ab8:C, 8ab8:N, 8ab9:C, 8ab9:N, 8aba:C, 8aba:N, 8abb:C, 8abb:N, 8abe:C, 8abe:N, 8abf:C, 8abf:N, 8abg:C, 8abg:N, 8abh:C, 8abh:N, 8abi:C, 8abi:N, 8abj:C, 8abj:N, 8abk:C, 8abk:N, 8abl:C, 8abl:N, 8abm:C, 8abm:N, 8ac3:C, 8ac3:N, 8ac4:C, 8ac4:N, 8ac5:C, 8ac5:N
4 8q1b:C 387 377 0.5766 0.5736 0.5889 1.44e-156 8q1b:N
5 3cwb:C 380 372 0.5065 0.5132 0.5242 4.88e-142 1bcc:C, 2bcc:C, 3bcc:C, 3cwb:P, 3h1h:C, 3h1h:P, 3h1i:C, 3h1i:P, 3h1j:C, 3h1j:P, 3h1k:C, 3h1k:P, 3h1l:C, 3h1l:P, 3l70:C, 3l70:P, 3l71:C, 3l71:P, 3l72:C, 3l72:P, 3l73:C, 3l73:P, 3l74:C, 3l74:P, 3l75:C, 3l75:P, 3tgu:C, 3tgu:P, 4u3f:C, 4u3f:P
6 7jrg:C 388 363 0.5091 0.5052 0.5399 6.99e-142 8bel:C, 8bel:M, 8bpx:AC, 8bpx:BC, 8bq5:AC, 8bq5:BC, 8bq6:AC, 8bq6:BC, 8e73:C, 8e73:O, 7jrg:O, 7jrp:C, 7jrp:O
7 7o37:C 380 372 0.4831 0.4895 0.5000 1.23e-132 8iao:AC, 8iao:Ac, 8iar:AC, 8iar:Ac, 8ib4:AC, 8ib4:Ac, 8ib7:AC, 8ib7:Ac, 8ib9:AC, 8ib9:Ac, 8ibc:AC, 8ibc:Ac, 8ibd:AC, 8ibd:Ac, 8ibg:AC, 8ibg:Ac, 8ic2:AC, 8ic2:Ac, 8ic5:AC, 8ic5:Ac, 7o37:N, 7o3c:C, 7o3c:N, 7o3e:C, 7o3e:N, 7o3h:C, 7o3h:N, 8pw5:C, 8pw5:N, 8pw6:C, 8pw6:N, 8pw7:C, 8pw7:N
8 1be3:C 379 374 0.5013 0.5092 0.5160 4.33e-131 2a06:C, 2a06:P, 1bgy:C, 1bgy:O, 4d6t:C, 4d6t:P, 4d6u:C, 4d6u:P, 7dgq:m, 7dgq:y, 7dgr:m, 7dgr:y, 7dgs:m, 7dgs:y, 7dkf:C1, 7dkf:O1, 6fo0:P, 6fo0:C, 6fo2:P, 6fo2:C, 6fo6:C, 6fo6:P, 2fyu:C, 5gpn:C, 5gpn:O, 5gup:w, 5gup:7, 6haw:C, 8iog:A, 8iog:a, 5j4z:AC, 5j4z:AN, 5j7y:AC, 5j7y:AN, 5j8k:AC, 5j8k:AN, 5klv:C, 1l0l:C, 1l0n:C, 5luf:b, 5luf:o, 6nhg:C, 5nmi:C, 5nmi:P, 1ntk:C, 1ntm:C, 1ntz:C, 1nu1:C, 5okd:C, 8p65:C, 8p65:P, 1pp9:C, 1pp9:P, 1ppj:C, 1ppj:P, 6q9e:b1, 6q9e:b2, 6qbx:b1, 6qbx:b2, 1qcr:C, 6qc2:b1, 6qc2:b2, 6qc3:b1, 6qc3:b2, 6qc4:b1, 6qc4:b2, 7r3v:C, 1sqb:C, 1sqp:C, 1sqq:C, 1sqv:C, 1sqx:C, 7tay:C, 7tz6:C, 7tz6:P, 8ugd:3C, 8ugd:3P, 8uge:3C, 8uge:3P, 8ugf:3C, 8ugf:3P, 8ugg:3C, 8ugg:3P, 8ugh:3C, 8ugh:3P, 8ugi:3C, 8ugi:3P, 8ugj:3C, 8ugj:3P, 8ugk:3C, 8ugk:3P, 8ugn:3C, 8ugn:3P, 8ugr:3C, 8ugr:3P, 8ugr:6C, 8ugr:6P, 6xvf:C, 2ybb:C, 2ybb:c, 6zfs:C, 6zft:C, 6zfu:C
9 5xte:J 378 374 0.4857 0.4947 0.5000 3.69e-129 5xte:V, 5xth:AJ, 5xth:AV, 5xti:AJ, 5xti:AV
10 8asi:B 433 381 0.4727 0.4203 0.4777 5.51e-124 8asi:F, 8asj:B, 8asj:F, 2fyn:A, 2fyn:D, 2fyn:G, 2fyn:J, 2fyn:M, 2fyn:P, 5kkz:A, 5kkz:E, 5kkz:K, 5kkz:O, 5kli:A, 5kli:E, 5kli:K, 5kli:O, 6nhh:A, 6nhh:E, 6nin:A, 6nin:E, 6nin:K, 6nin:O, 6nin:S, 6nin:W, 2qjk:A, 2qjk:D, 2qjk:G, 2qjk:J, 2qjk:M, 2qjk:P, 2qjp:A, 2qjp:D, 2qjp:G, 2qjp:J, 2qjy:A, 2qjy:D, 2qjy:G, 2qjy:J, 2qjy:M, 2qjy:P, 7tce:A, 7tce:E, 7tce:K, 7tce:O, 7tlj:A, 7tlj:E
11 1zrt:C 431 381 0.4701 0.4200 0.4751 2.05e-123 6xi0:C, 6xi0:P, 6xkt:C, 6xkt:P, 6xku:C, 6xku:P, 6xkv:C, 6xkv:P, 6xkw:C, 6xkw:P, 6xkx:C, 6xkx:P, 6xkz:C, 6xkz:P, 1zrt:P
12 2yiu:A 428 369 0.4649 0.4182 0.4851 4.87e-122 2yiu:D
13 8smr:I 403 367 0.4234 0.4045 0.4441 1.40e-99 8smr:D, 8snh:I, 8snh:D
14 8iuf:QC 364 280 0.2987 0.3159 0.4107 6.65e-61 8iuf:Qc, 8iuj:QC, 8iuj:Qc
15 6kls:B 395 362 0.3351 0.3266 0.3564 9.41e-56 6kls:E, 6klv:B, 6klv:E
16 1q90:B 212 207 0.1610 0.2925 0.2995 3.18e-33
17 7r0w:I 222 189 0.1532 0.2658 0.3122 5.46e-33 7r0w:A, 7zxy:A, 7zxy:I
18 6rqf:I 215 207 0.1532 0.2744 0.2850 2.78e-32 7qrm:I, 7qrm:A, 6rqf:A, 7zyv:I, 7zyv:A
19 2e74:A 215 189 0.1481 0.2651 0.3016 7.76e-30 2d2c:A, 2d2c:N, 2e75:A, 2e76:A, 4h0l:A, 4h13:A, 4h44:A, 4i7z:A, 4ogq:A, 4pv1:A, 1vf5:A, 1vf5:N, 2zt9:A
20 7q21:b 534 286 0.1896 0.1367 0.2552 2.69e-13 7q21:B, 7qhm:B, 7qhm:O, 7qho:B, 7qho:O
21 8b6j:C 426 291 0.1688 0.1526 0.2234 4.24e-11 8b6j:c, 8bqs:C, 8bqs:c, 8gym:qc, 8gym:qC, 8gym:QC, 8gym:Qc, 8gzu:qC, 8gzu:qc, 8gzu:QC, 8gzu:Qc, 7tgh:3C, 7tgh:3c
22 7e1v:N 524 160 0.1169 0.0859 0.2812 4.42e-11 7e1v:B, 7e1w:N, 7e1w:B, 7e1x:N, 7e1x:B, 8hcr:B, 8hcr:N
23 6hwh:b 536 294 0.1766 0.1269 0.2313 1.08e-10 6adq:B, 6adq:N, 6hwh:Y, 8ovc:H, 8ovc:N, 8ovd:N, 8ovd:H, 7rh5:E, 7rh5:F, 7rh6:F, 7rh6:E, 7rh7:E, 7rh7:F
24 2e74:B 160 94 0.0987 0.2375 0.4043 1.18e-10 2d2c:B, 2d2c:O, 2e75:B, 2e76:B, 4h0l:B, 4h13:B, 4h44:B, 4i7z:B, 4ogq:B, 4pv1:B, 1vf5:B, 1vf5:O, 2zt9:B
25 6rqf:J 160 61 0.0675 0.1625 0.4262 3.62e-09 7qrm:B, 7qrm:J, 6rqf:B, 7zyv:J, 7zyv:B
26 7r0w:J 159 71 0.0753 0.1824 0.4085 3.95e-09 7r0w:B, 7zxy:B, 7zxy:J
27 1q90:D 156 74 0.0779 0.1923 0.4054 8.28e-09
28 1c8s:A 196 48 0.0390 0.0765 0.3125 3.7
29 1cwq:A 238 48 0.0390 0.0630 0.3125 5.0 5a44:A, 5a45:A, 1ap9:A, 1at9:A, 2at9:A, 5b34:A, 5b35:A, 5b6v:A, 5b6w:A, 5b6x:A, 5b6y:A, 5b6z:A, 1bm1:A, 1brr:B, 1brr:A, 1brr:C, 1brx:A, 2brd:A, 5br2:A, 5br5:A, 1c3w:A, 1c8r:A, 3coc:A, 3coc:B, 3cod:A, 3cod:B, 1cwq:B, 1dze:A, 1e0p:A, 1f4z:A, 1f50:A, 1fbb:A, 1fbk:A, 4fpd:A, 6g7h:A, 6g7i:A, 6g7j:A, 6g7k:A, 6g7l:A, 6ga1:A, 6ga2:A, 6ga3:A, 6ga4:A, 6ga5:A, 6ga6:A, 6ga7:A, 6ga8:A, 6ga9:A, 6gaa:A, 6gab:A, 6gac:A, 6gad:A, 6gae:A, 6gaf:A, 6gag:A, 6gah:A, 6gai:A, 5h2h:A, 5h2i:A, 5h2j:A, 5h2k:A, 5h2l:A, 5h2m:A, 5h2n:A, 5h2o:A, 5h2p:A, 3han:A, 3hao:A, 3hao:B, 3hap:A, 3haq:A, 3har:A, 3has:A, 4hwl:A, 4hwl:B, 4hyx:A, 4hyx:B, 2i1x:A, 2i20:A, 2i21:A, 1iw6:A, 1iw9:A, 1ixf:A, 5j7a:A, 1jv6:A, 1jv7:A, 1kg8:A, 1kg9:A, 1kgb:A, 1kme:A, 1kme:B, 1m0k:A, 1m0l:A, 1m0m:A, 3mbv:A, 4md1:A, 4md2:A, 1mgy:A, 3ns0:A, 3nsb:A, 2ntu:A, 2ntw:A, 1o0a:A, 4ov0:A, 1p8h:A, 1p8i:A, 1p8u:A, 1pxr:A, 1pxr:B, 1pxs:A, 1pxs:B, 1py6:A, 1py6:B, 7q35:A, 7q38:A, 1q5i:A, 1q5i:B, 1q5j:A, 1q5j:B, 1qhj:A, 1qko:A, 1qkp:A, 1qm8:A, 1r2n:A, 1r84:A, 6rmk:A, 6rnj:A, 6rph:A, 6rqo:A, 6rqp:A, 1s51:A, 1s51:B, 1s52:A, 1s52:B, 1s53:A, 1s53:B, 1s54:A, 1s54:B, 1s8j:A, 1s8l:A, 3t45:A, 3t45:B, 3t45:C, 1tn0:A, 1tn0:B, 1tn5:A, 1tn5:B, 1ucq:A, 3utv:A, 3utw:A, 3utx:A, 3utx:B, 3uty:A, 3uty:B, 3vhz:A, 3vi0:A, 1vjm:A, 7vso:A, 2wjk:A, 2wjl:A, 1x0i:1, 1x0k:1, 1x0s:A, 4x31:A, 4x32:A, 1xji:A, 7xjc:A, 7xjd:A, 7xje:A, 4xxj:A, 4xxj:C, 4xxj:B, 4y9h:A, 7z0e:P, 2zfe:A, 5zil:A, 5zim:A, 5zin:A, 2zzl:A
30 4jls:B 135 22 0.0260 0.0741 0.4545 6.6 4jls:A, 4jls:C, 4jls:D, 4jls:E, 4jls:H, 4jls:I, 4jls:J
31 1a95:B 150 22 0.0260 0.0667 0.4545 7.0 1a95:C, 1a96:B, 1a96:C, 1a97:B, 1a97:C, 4jit:B, 4jit:C
32 7mqa:LM 2041 51 0.0519 0.0098 0.3922 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218