Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MAEVIKSIMRKFPLGVAIVTTNWKGELVGMTVNTFNSLSLNPPLVSFFADRMKGNDIPYKESKYFVVNFTDNEELFNIFA
LKPVKERFREIKYKEGIGGCPILYDSYAYIEAKLYDTIDVGDHSIIVGEVIDGYQIRDNFTPLVYMNRKYYKLSS

The query sequence (length=155) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2d38:A 156 155 1.0000 0.9936 1.0000 2.42e-113 2d36:A, 2d37:A
2 4l82:B 167 150 0.3290 0.3054 0.3400 9.58e-24 4l82:A
3 1rz0:A 153 155 0.3226 0.3268 0.3226 2.19e-20 1rz0:B, 1rz0:C, 1rz0:D, 1rz0:E, 1rz0:F, 1rz0:G, 1rz0:H, 1rz1:A, 1rz1:B, 1rz1:C, 1rz1:D, 1rz1:E, 1rz1:F, 1rz1:G, 1rz1:H
4 8ct0:H 178 151 0.3290 0.2865 0.3377 3.36e-19 8ct0:A, 8ct0:B, 8ct0:C, 8ct0:G, 8ct0:D, 8ct0:E, 8ct0:F
5 3rh7:A 292 130 0.2774 0.1473 0.3308 7.39e-19 3rh7:C, 3rh7:D, 3rh7:F
6 5zyr:A 306 148 0.3097 0.1569 0.3243 1.12e-17 5zc2:B, 5zc2:A, 5zyr:B
7 4xj2:A 162 151 0.2452 0.2346 0.2517 1.11e-15
8 2ed4:A 149 156 0.3161 0.3289 0.3141 4.30e-13 2ed4:B
9 4f07:F 155 143 0.2387 0.2387 0.2587 1.39e-11 4f07:A, 4f07:B, 4f07:C, 4f07:G, 4f07:D, 4f07:E, 4f07:H, 4f07:I, 4f07:J, 4f07:L, 4f07:K
10 1i0r:A 161 134 0.2581 0.2484 0.2985 3.99e-11 1i0s:A
11 3cb0:A 166 153 0.2452 0.2289 0.2484 5.07e-11 3cb0:B, 4ira:A
12 3k87:A 164 155 0.2516 0.2378 0.2516 2.28e-10 3k87:B, 3k88:A, 3k88:B
13 3pft:B 157 149 0.2516 0.2484 0.2617 2.90e-08 3pft:A
14 5cho:A 165 131 0.2323 0.2182 0.2748 1.27e-07 5cho:C, 5cho:B, 5cho:D, 5cho:E, 5cho:F, 5cho:G, 5cho:H
15 4r82:A 166 109 0.2129 0.1988 0.3028 1.01e-06 4r82:B
16 1yoa:A 159 128 0.2000 0.1950 0.2422 0.014
17 3bnk:B 187 132 0.1935 0.1604 0.2273 0.079 3bnk:A
18 1eje:A 192 127 0.1742 0.1406 0.2126 0.11
19 2r6v:A 182 39 0.0968 0.0824 0.3846 0.13 3zoc:A, 3zod:A, 3zog:A
20 1usc:A 178 36 0.0968 0.0843 0.4167 0.13 1usc:B, 1usf:A, 1usf:B, 3zoe:A, 3zoe:B, 3zof:A, 3zof:B, 3zoh:A, 3zoh:B, 3zoh:C, 3zoh:D
21 4mzu:F 294 66 0.1290 0.0680 0.3030 0.63 4mzu:A, 4mzu:C, 4mzu:E, 4mzu:B, 4mzu:D, 4mzu:G, 4mzu:I, 4mzu:K, 4mzu:H, 4mzu:J, 4mzu:L, 4zu4:A, 4zu4:B, 4zu4:C
22 4hv4:A 465 83 0.1161 0.0387 0.2169 1.5 4hv4:B
23 4qro:A 332 49 0.0839 0.0392 0.2653 3.0 4qro:B, 4qro:C, 4qro:D, 4qro:E, 4qro:F, 4qro:G, 4qro:H
24 1f2e:A 201 53 0.0839 0.0647 0.2453 3.5 1f2e:B, 1f2e:C, 1f2e:D
25 6m1t:A 201 42 0.0774 0.0597 0.2857 4.4 6m1t:B
26 7otj:A 438 73 0.1032 0.0365 0.2192 6.2 7otj:B
27 2o2h:A 294 33 0.0774 0.0408 0.3636 6.5 2o2i:A
28 1gqy:B 469 75 0.1097 0.0362 0.2267 6.7 1gqy:A, 1p31:A, 1p31:B, 1p3d:A, 1p3d:B
29 6tqe:A 634 27 0.0645 0.0158 0.3704 7.8 6tqe:B, 6tqf:A, 6tqf:B
30 2r7k:A 358 47 0.1161 0.0503 0.3830 9.8 2r7l:A, 2r7m:A, 2r7n:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218