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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MAEVIKSIMRKFPLGVAIVTTNWKGELVGMTVNTFNSLSLNPPLVSFFADRMKGNDIPYKESKYFVVNFTDNEELFNIFA
LKPVKERFREIKYKEGIGGCPILYDSYAYIEAKLYDTIDVGDHSIIVGEVIDGYQIRDNFTPLVYMNRKYYKLS

The query sequence (length=154) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2d38:A 156 154 1.0000 0.9872 1.0000 1.53e-112 2d36:A, 2d37:A
2 4l82:B 167 150 0.3312 0.3054 0.3400 8.15e-24 4l82:A
3 1rz0:A 153 154 0.3247 0.3268 0.3247 2.42e-20 1rz0:B, 1rz0:C, 1rz0:D, 1rz0:E, 1rz0:F, 1rz0:G, 1rz0:H, 1rz1:A, 1rz1:B, 1rz1:C, 1rz1:D, 1rz1:E, 1rz1:F, 1rz1:G, 1rz1:H
4 8ct0:H 178 151 0.3312 0.2865 0.3377 2.99e-19 8ct0:A, 8ct0:B, 8ct0:C, 8ct0:G, 8ct0:D, 8ct0:E, 8ct0:F
5 3rh7:A 292 130 0.2792 0.1473 0.3308 6.40e-19 3rh7:C, 3rh7:D, 3rh7:F
6 5zyr:A 306 148 0.3117 0.1569 0.3243 9.72e-18 5zc2:B, 5zc2:A, 5zyr:B
7 4xj2:A 162 151 0.2468 0.2346 0.2517 1.05e-15
8 2ed4:A 149 156 0.3182 0.3289 0.3141 4.61e-13 2ed4:B
9 4f07:F 155 143 0.2403 0.2387 0.2587 1.19e-11 4f07:A, 4f07:B, 4f07:C, 4f07:G, 4f07:D, 4f07:E, 4f07:H, 4f07:I, 4f07:J, 4f07:L, 4f07:K
10 1i0r:A 161 134 0.2597 0.2484 0.2985 3.85e-11 1i0s:A
11 3cb0:A 166 153 0.2468 0.2289 0.2484 4.65e-11 3cb0:B, 4ira:A
12 3k87:A 164 150 0.2468 0.2317 0.2533 2.76e-10 3k87:B, 3k88:A, 3k88:B
13 3pft:B 157 147 0.2532 0.2484 0.2653 3.67e-08 3pft:A
14 5cho:A 165 131 0.2338 0.2182 0.2748 1.39e-07 5cho:C, 5cho:B, 5cho:D, 5cho:E, 5cho:F, 5cho:G, 5cho:H
15 4r82:A 166 109 0.2143 0.1988 0.3028 9.93e-07 4r82:B
16 1yoa:A 159 128 0.2013 0.1950 0.2422 0.013
17 3bnk:B 187 132 0.1948 0.1604 0.2273 0.069 3bnk:A
18 1eje:A 192 127 0.1753 0.1406 0.2126 0.099
19 2r6v:A 182 39 0.0974 0.0824 0.3846 0.13 3zoc:A, 3zod:A, 3zog:A
20 1usc:A 178 36 0.0974 0.0843 0.4167 0.14 1usc:B, 1usf:A, 1usf:B, 3zoe:A, 3zoe:B, 3zof:A, 3zof:B, 3zoh:A, 3zoh:B, 3zoh:C, 3zoh:D
21 4mzu:F 294 66 0.1299 0.0680 0.3030 0.59 4mzu:A, 4mzu:C, 4mzu:E, 4mzu:B, 4mzu:D, 4mzu:G, 4mzu:I, 4mzu:K, 4mzu:H, 4mzu:J, 4mzu:L, 4zu4:A, 4zu4:B, 4zu4:C
22 4qro:A 332 49 0.0844 0.0392 0.2653 2.8 4qro:B, 4qro:C, 4qro:D, 4qro:E, 4qro:F, 4qro:G, 4qro:H
23 1f2e:A 201 53 0.0844 0.0647 0.2453 3.4 1f2e:B, 1f2e:C, 1f2e:D
24 6m1t:A 201 42 0.0779 0.0597 0.2857 4.3 6m1t:B
25 7otj:A 438 73 0.1039 0.0365 0.2192 6.1 7otj:B
26 2o2h:A 294 33 0.0779 0.0408 0.3636 6.4 2o2i:A
27 1gqy:B 469 75 0.1104 0.0362 0.2267 6.6 1gqy:A, 1p31:A, 1p31:B, 1p3d:A, 1p3d:B
28 6tqe:A 634 27 0.0649 0.0158 0.3704 7.7 6tqe:B, 6tqf:A, 6tqf:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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