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BioLiP
>protein
MAEIYLAGGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLLKETDHAETVQVIYDEKEVSLREILLYYFRVIDPLSI
NQQGNDRGRQYRTGIYYQDEADLPAIYTVVQEQERMLGRKIAVEVEQLRHYILAEDYHQDYLRKNPSGYCHIDVTDADKP
LIDAANYEKPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCGWPSFSRPLSK
ELIHYYKDLSHGMERIEVRSRSGSAHLGHVFTDGPRELGGLRYCINSASLRFVAKDEMEKAGYGYLLPYLNK

The query sequence (length=312) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3e0m:C 313 312 1.0000 0.9968 1.0000 0.0 3e0m:A, 3e0m:B
2 7e43:B 324 309 0.5865 0.5648 0.5922 6.61e-135 7e43:A
3 3bqf:A 167 160 0.2660 0.4970 0.5188 1.50e-55
4 3hch:A 145 140 0.2436 0.5241 0.5429 2.38e-52 3hch:B
5 6sym:A 135 132 0.2212 0.5111 0.5227 7.97e-41 6sym:B
6 3cxk:A 131 121 0.2051 0.4885 0.5289 1.48e-38 3cez:A, 3cez:B, 3cxk:B
7 6q9v:B 145 123 0.1827 0.3931 0.4634 8.00e-31 6q9v:A, 6qa0:A, 6qa0:B
8 2k8d:A 151 128 0.1859 0.3841 0.4531 1.48e-30
9 6tr8:A 136 137 0.1891 0.4338 0.4307 4.85e-28
10 4d7l:A 213 161 0.1859 0.2723 0.3602 1.61e-23 4d7l:B, 4d7l:C
11 3hci:A 153 140 0.1731 0.3529 0.3857 2.42e-22 3hci:B, 3hcj:A, 3hcj:B
12 4lwm:A 205 142 0.1442 0.2195 0.3169 6.39e-17
13 3mao:A 105 104 0.1090 0.3238 0.3269 5.45e-07
14 6z1p:BL 181 134 0.1122 0.1934 0.2612 0.022
15 7x8k:B 367 114 0.1122 0.0954 0.3070 1.2 7x8k:A, 7x8k:D
16 5iji:A 227 78 0.0577 0.0793 0.2308 1.4 5jef:A, 5jef:B, 5jgp:A
17 4url:A 364 69 0.0673 0.0577 0.3043 4.3 4url:B, 4urn:A, 4urn:B, 4urn:C
18 5t9g:C 811 51 0.0545 0.0210 0.3333 4.4 5t9g:A, 5t9g:B, 5t9g:D
19 6se3:D 528 27 0.0385 0.0227 0.4444 4.5 6se3:A, 6se3:B, 6se3:C, 6se3:E, 6se3:F
20 3eo8:A 219 35 0.0417 0.0594 0.3714 4.6 3eo8:B, 3eo8:C, 3eo8:D, 3eo8:E, 3eo8:F
21 1e3d:B 537 138 0.1026 0.0596 0.2319 6.4 1e3d:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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