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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MAEIIQERIEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQYEINLLELIQRRRTRIGYSFK
KDEIENSIVHRVQGVFQRASAKWKDDVQLWLSYVAFCKKWATKTRLSKVFSAMLAIHSNKPALWIMAAKWEMEDRLSSES
ARQLFLRALRFHPECPKLYKEYFRMELMHAEKLRKEKEEFSEEILKGELAWIIYKNSVSIIKGAEFHVSLLSIAQLFDFA
KDLQKEIYDDLQALHTDDPLTWDYVARRELEAKAVEVGRKEERCCAVYEEAVKTLPTEAMWKCYITFCLERFTKLRGKRL
ERTMTVFRKAHELKLLSECQYKQLSVSLLCYNFLREALEVAVAGTELFRDSGTMWQLKLQVLIESKSPDIAMLFEEAFVH
LKPQVCLPLWISWAEWSEGAKSQEDTEAVFKKALLAVIGADSVTLKNKYLDWAYRSGGYKKARAVFKSLQESRPFSVDFF
RKMIQFEKEQESCNMANIREYYERALREFGSADSDLWMDYMKEELNHPLGRPENCGQIYWRAMKMLQGESAEAFVAKHAM
HQTGHL

The query sequence (length=566) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7mq8:LP 567 567 1.0000 0.9982 0.9982 0.0 7mq9:LP, 7mqa:LP
2 7suk:LP 359 211 0.1131 0.1783 0.3033 2.84e-28 5wlc:LP
3 7suk:LP 359 81 0.0424 0.0669 0.2963 0.21 5wlc:LP
4 7d4i:B6 377 211 0.1131 0.1698 0.3033 6.65e-28 7ajt:UF, 7d5s:B6, 7d5t:B6, 7d63:B6, 6ke6:B6, 6lqp:B6, 6lqq:B6, 6lqr:B6, 6lqs:B6, 6lqt:B6, 6lqu:B6, 6lqv:B6, 6zqa:UF, 6zqb:UF, 6zqc:UF
5 7d4i:B6 377 81 0.0424 0.0637 0.2963 0.27 7ajt:UF, 7d5s:B6, 7d5t:B6, 7d63:B6, 6ke6:B6, 6lqp:B6, 6lqq:B6, 6lqr:B6, 6lqs:B6, 6lqt:B6, 6lqu:B6, 6lqv:B6, 6zqa:UF, 6zqb:UF, 6zqc:UF
6 5oql:E 331 262 0.1148 0.1964 0.2481 2.92e-17 6rxt:UF, 6rxu:UF, 6rxv:UF, 6rxy:UF, 6rxz:UF
7 8ro0:J 574 466 0.1802 0.1777 0.2189 0.008 8ro1:J
8 8ro0:J 574 127 0.0530 0.0523 0.2362 1.8 8ro1:J
9 8ro0:J 574 126 0.0530 0.0523 0.2381 5.2 8ro1:J
10 8c6j:S 635 534 0.1873 0.1669 0.1985 0.026 7abi:O, 8ch6:X, 6ff4:O, 8i0r:J, 8i0s:J, 8i0t:J, 5mqf:O, 7qtt:X, 6zym:O
11 8c6j:S 635 126 0.0495 0.0441 0.2222 1.4 7abi:O, 8ch6:X, 6ff4:O, 8i0r:J, 8i0s:J, 8i0t:J, 5mqf:O, 7qtt:X, 6zym:O
12 8c6j:S 635 478 0.1943 0.1732 0.2301 5.5 7abi:O, 8ch6:X, 6ff4:O, 8i0r:J, 8i0s:J, 8i0t:J, 5mqf:O, 7qtt:X, 6zym:O
13 7zy4:B 306 116 0.0530 0.0980 0.2586 0.054 7zy4:A
14 7d5s:RD 265 100 0.0283 0.0604 0.1600 0.53 6lqu:RD, 7suk:NJ, 5wlc:NJ
15 3jb9:R 575 75 0.0336 0.0330 0.2533 1.2
16 3jb9:R 575 131 0.0512 0.0504 0.2214 2.3
17 3jb9:R 575 130 0.0583 0.0574 0.2538 5.1
18 3jb9:R 575 97 0.0424 0.0417 0.2474 5.8
19 8i0w:J 571 126 0.0495 0.0490 0.2222 1.4 7dvq:J, 8i0u:J, 8i0v:J, 6icz:J, 6id0:J, 6id1:J, 6qdv:S, 7w59:J, 7w5a:J, 7w5b:J, 5xjc:J, 5yzg:J, 5z56:J, 5z57:J, 5z58:J
20 8i0w:J 571 103 0.0406 0.0403 0.2233 4.6 7dvq:J, 8i0u:J, 8i0v:J, 6icz:J, 6id0:J, 6id1:J, 6qdv:S, 7w59:J, 7w5a:J, 7w5b:J, 5xjc:J, 5yzg:J, 5z56:J, 5z57:J, 5z58:J
21 8i0w:J 571 292 0.1148 0.1138 0.2226 5.9 7dvq:J, 8i0u:J, 8i0v:J, 6icz:J, 6id0:J, 6id1:J, 6qdv:S, 7w59:J, 7w5a:J, 7w5b:J, 5xjc:J, 5yzg:J, 5z56:J, 5z57:J, 5z58:J
22 1ur2:A 351 41 0.0300 0.0484 0.4146 2.1 2cnc:A, 1uqy:A, 1uqz:A, 1ur1:A
23 2nx9:B 453 89 0.0424 0.0530 0.2697 7.6 2nx9:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218