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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MADGQVAELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEEIAREGSHEARV
FRSIPPEGLAQSELMRLPSGKVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELR
KRKLLAEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLE
MGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEAR
KNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKLGI
TQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLPMGLPENVSVIAWGLSLERPTMIKYGINNIRELVGH
KVNLQMVYDSPLCRLDAEPRPPPTQEAA

The query sequence (length=508) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3l4g:C 508 508 1.0000 1.0000 1.0000 0.0 3l4g:A, 3l4g:E, 3l4g:G, 3l4g:I, 3l4g:K, 3l4g:M, 3l4g:O
2 7dpi:C 292 286 0.3130 0.5445 0.5559 1.13e-118 7dpi:A
3 7by6:A 299 296 0.3189 0.5418 0.5473 1.85e-117
4 1eiy:A 345 276 0.1831 0.2696 0.3370 4.66e-36 2akw:A, 2aly:A, 2amc:A, 1b70:A, 1b7y:A, 3hfz:A, 2iy5:A, 1jjc:A, 3teh:A, 4tva:A
5 7k98:A 343 274 0.1752 0.2595 0.3248 4.78e-34 7daw:A, 7db7:A, 7db8:A, 7k98:D, 7k9m:A, 7ka0:A, 7ka0:D, 7kab:A
6 3pco:C 323 261 0.1693 0.2663 0.3295 3.90e-33 6oz5:A, 6oz5:C, 6p24:A, 6p26:A, 6p26:C, 3pco:A
7 2rhs:C 271 277 0.1594 0.2989 0.2924 2.27e-30 2rhq:A, 2rhs:A
8 4p72:D 244 261 0.1575 0.3279 0.3065 7.55e-29 4p72:C, 4p73:C, 4p73:D, 4p74:C, 4p74:D, 4p75:C, 4p75:D
9 6p8t:H 326 266 0.1594 0.2485 0.3045 4.05e-26 6p8t:C, 6p8t:D, 6p8t:G
10 5x6c:A 539 162 0.1122 0.1058 0.3519 1.52e-18 5x6c:B
11 5x6c:A 539 28 0.0236 0.0223 0.4286 5.0 5x6c:B
12 2du4:A 466 170 0.1063 0.1159 0.3176 5.05e-15 2du3:B, 2du5:B, 2du6:B
13 2du3:A 534 170 0.1063 0.1011 0.3176 5.23e-15 2du5:A, 2du6:A
14 5mgu:A 407 297 0.1378 0.1720 0.2357 4.93e-09 3cmq:A, 3hfv:A, 5mgh:A, 5mgw:A, 8p8x:A, 3teg:A, 3tup:A
15 4cs3:A 270 113 0.0551 0.1037 0.2478 0.017 6aac:A, 6aad:A, 6aan:A, 6aao:A, 6aap:A, 6aaq:A, 6aaz:A, 6ab0:A, 6ab1:A, 6ab2:A, 6ab8:A, 6abk:A, 6abl:A, 6abm:A, 4bw9:A, 4bwa:A, 4ch3:A, 4ch4:A, 4ch5:A, 4ch6:A, 4cs4:A, 5k1p:A, 5k1x:A, 8ke1:A, 8ke2:A, 8ke3:A, 8ke4:A, 8ke5:A, 8ke6:A, 6ly3:A, 6ly6:A, 6ly7:A, 6lya:A, 6lyb:A, 4q6g:A, 2q7e:A, 2q7g:A, 2q7h:A, 3qtc:A, 7rsm:A, 7rsm:B, 7rsm:C, 7rsm:D, 4tqd:A, 4tqf:A, 3vqv:A, 3vqw:A, 3vqx:A, 3vqx:B, 3vqx:C, 3vqx:D, 3vqy:A, 2zce:A, 2zim:A, 2zin:A, 2zio:A, 4zib:A
16 2gzm:A 266 86 0.0492 0.0940 0.2907 0.32 2gzm:B, 2gzm:C, 2gzm:D
17 6aqg:C 490 26 0.0256 0.0265 0.5000 0.93 6aqg:A, 6aqg:B, 6aqg:D, 5vl1:A, 5vl1:B, 5vl1:C, 5vl1:D
18 6aqh:B 490 26 0.0256 0.0265 0.5000 0.96 6aqh:A, 6aqh:C, 6aqh:D
19 1mqs:A 588 85 0.0413 0.0357 0.2471 1.3
20 6nrz:A 517 30 0.0276 0.0271 0.4667 1.4 6nrz:B, 6ns0:A, 6ns0:B, 6o3f:A, 6o3f:B
21 5zh2:A 464 103 0.0531 0.0582 0.2621 1.6
22 2yq5:C 331 45 0.0256 0.0393 0.2889 2.6 2yq5:A, 2yq5:B, 2yq5:D
23 5hgq:B 482 30 0.0276 0.0290 0.4667 2.8 5hgq:A, 5hgq:D, 5hgq:C
24 6agt:B 506 55 0.0354 0.0356 0.3273 3.2 6agt:A, 6agt:C, 6agt:D, 7bt5:A, 7bt5:B, 6hcu:A, 6hcu:B, 6hcv:A, 6hcv:B, 8k9s:A, 8k9s:B, 8k9u:A, 8k9u:B, 8k9v:A, 8k9v:B, 8k9w:A, 8k9w:B, 8k9x:A, 8k9x:B, 6ka6:A, 6ka6:B, 6ka6:C, 6ka6:D, 6kab:A, 6kab:B, 6kab:C, 6kab:D, 6kbf:A, 6kbf:B, 6kcn:A, 6kcn:B, 6kcn:C, 6kcn:D, 6kct:A, 6kct:B, 6kct:C, 6kct:D, 6l3y:B, 6l3y:A, 6l4q:B, 6l4q:A, 6m0t:A, 6m0t:B, 6m0t:C, 6m0t:D, 4pg3:A, 4pg3:B, 4pg3:C, 4pg3:D, 4ycv:A, 4ycv:B, 4ycv:C, 4ycv:D, 5zh2:B, 5zh3:A, 5zh3:B, 5zh4:A, 5zh4:B, 5zh5:A, 5zh5:B
25 8q7z:BD 296 65 0.0374 0.0642 0.2923 4.2 7a01:G2, 8a3d:G, 5aj0:AD, 8b5l:D, 8b6c:D, 9bdl:AL05, 9bdn:AL05, 9bdp:AL05, 8bgu:A, 7bhp:LD, 8bhf:m3, 8bpo:D2, 8btk:BD, 7cpu:LD, 7cpv:LD, 4d5y:D, 4d67:D, 6d90:D, 6d9j:D, 9f1b:B, 9f1c:B, 9f1d:B, 7f5s:LD, 8fl0:SB, 8fl2:SB, 8fl3:SB, 8fl4:SB, 8fl6:SB, 8fl7:SB, 8fl9:SB, 8fla:SB, 8flb:SB, 8flc:SB, 8fld:SB, 8fle:SB, 8flf:SB, 6frk:D, 6ftg:D, 6fti:D, 6ftj:D, 8g5y:LD, 8g5z:LD, 8g60:LD, 8g61:LD, 8g6j:LD, 8glp:LD, 6gz3:AD, 6gz4:AD, 6gz5:AD, 6hcf:D3, 6hcj:D3, 6hcm:D3, 6hcq:D3, 8idt:r, 8idy:r, 8ie3:r, 8ifd:1G, 8ife:1G, 8ine:r, 8inf:r, 8ink:R, 6ip5:1G, 6ip6:1G, 6ip8:1G, 8ipd:R, 8ipx:R, 8ipy:R, 3j7o:D, 3j7p:D, 3j7q:D, 3j7r:D, 3j92:D, 3jag:D, 3jah:D, 3jai:D, 3jaj:D, 3jan:D, 8jdj:J, 8jdk:J, 8jdl:J, 8jdm:J, 8k2c:LD, 5lks:LD, 6lqm:r, 6lsr:r, 6lss:r, 7ls1:G2, 7ls2:G2, 6lu8:r, 5lzs:D, 5lzt:D, 5lzu:D, 5lzv:D, 5lzw:D, 5lzx:D, 5lzy:D, 5lzz:D, 7mdz:D, 6mtb:D, 6mtc:D, 6mtd:D, 6mte:D, 7nfx:D, 7nwg:D3, 7nwh:D, 7nwi:D, 7o7y:BD, 7o7z:BD, 7o80:BD, 7o81:BD, 7obr:D, 8ohd:LD, 8oj0:LD, 8oj5:LD, 8oj8:LD, 6ole:F, 6olf:F, 6olg:AD, 6oli:F, 6olz:AD, 6om0:F, 6om7:F, 7ow7:G, 7oyc:D1, 7oyd:D, 8p2k:BD, 6p5i:AD, 6p5j:AD, 6p5k:AD, 6p5n:AD, 8q87:BD, 8qfd:D, 7qgg:F, 8qoi:LD, 7qvp:LD, 7qvp:MD, 7qwq:D, 7qwr:D, 7qws:D, 6qzp:LD, 6r5q:D, 6r6g:D, 6r6p:D, 6r7q:D, 8rjb:D, 8rjc:D, 8rjd:D, 8scb:D, 6sgc:D2, 6swa:D, 5t2c:G, 6t59:D3, 7tm3:D, 7toq:AL05, 7tor:AL05, 7tut:D, 7ucj:D, 7uck:D, 4ug0:LD, 4ujc:BD, 4ujd:AD, 4uje:CD, 4v5z:Bn, 4v6x:CD, 6w6l:F, 6xa1:LD, 7xnx:LD, 7xny:LD, 8xsx:LD, 8xsy:LD, 8xsz:LD, 6y0g:LD, 8y0w:LD, 8y0x:LD, 6y2l:LD, 6y57:LD, 6y6x:LD, 8yoo:LD, 8yop:LD, 6z6l:LD, 6z6m:LD, 6z6n:LD, 7zjw:LG, 7zjx:LG, 6zm7:LD, 6zme:LD, 6zmi:LD, 6zmo:LD, 6zvk:G2
26 7qh8:A 471 26 0.0276 0.0297 0.5385 4.3 7qhn:A, 7qi8:A
27 4prl:A 330 45 0.0236 0.0364 0.2667 4.5 4prl:B
28 4up7:A 529 30 0.0256 0.0246 0.4333 6.2 4up9:A, 4upa:A
29 7oya:D1 288 65 0.0335 0.0590 0.2615 6.3 7oyb:D1
30 1rqb:A 472 20 0.0256 0.0275 0.6500 7.4 1rqe:A, 1rqh:A, 1rr2:A, 1s3h:A, 1u5j:A
31 4bxf:A 425 56 0.0374 0.0447 0.3393 8.0 4bxf:B
32 8pw0:A 137 55 0.0394 0.1460 0.3636 9.9
33 5u4q:A 321 119 0.0571 0.0903 0.2437 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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