Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MAASLLPSIFVPLVGLVFPAVAMASLFLYIEKEQV

The query sequence (length=35) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7yca:I 35 35 1.0000 1.0000 1.0000 7.00e-18
2 7a4p:I 35 35 0.8000 0.8000 0.8000 2.87e-14 6zzx:I, 6zzy:I
3 8htu:I 34 34 0.7143 0.7353 0.7353 1.96e-13 7ksq:I, 7kux:I, 6l35:I, 7xqp:I
4 6igz:I 32 32 0.7714 0.8438 0.8438 1.62e-12
5 8bcv:I 33 30 0.6571 0.6970 0.7667 5.75e-12 8bcw:I, 7ew6:I, 7ewk:I, 7f9o:I, 7f9o:l, 5zji:I
6 7wfd:AI 33 29 0.6857 0.7273 0.8276 6.70e-12 8j6z:I, 8j7a:I, 8j7b:I, 7wfe:BI, 7wg5:AI, 7wg5:BI
7 6ly5:i 33 28 0.6571 0.6970 0.8214 7.60e-11 7dkz:I, 5l8r:I, 3lw5:I, 2o01:I, 2wsc:I, 2wse:I, 2wsf:I, 4xk8:i, 6yac:I, 6yez:I, 6zoo:I, 6zxs:I
8 7dz7:I 42 30 0.6286 0.5238 0.7333 3.40e-10 7bgi:I, 7blx:I, 8cmo:I, 7d0j:I, 7dz8:I, 6ijj:I, 6ijo:I, 6jo5:I, 6jo6:I, 7r3k:I, 7zq9:I, 7zq9:I2, 7zqc:I, 7zqd:I, 7zqd:I2
9 6l4u:I 35 35 0.6000 0.6000 0.6000 4.03e-10
10 7qco:I 39 33 0.6286 0.5641 0.6667 4.09e-10 7qco:P, 7qco:p, 7qco:i
11 8wm6:I 34 34 0.5143 0.5294 0.5294 2.17e-08 8wmj:I, 8wmv:I, 8wmw:I
12 7y5e:IN 31 31 0.5714 0.6452 0.6452 2.47e-08 7y5e:I2, 7y7a:I7, 7y7a:Io
13 6kif:I 38 32 0.6286 0.5789 0.6875 3.02e-08 6kif:S, 6kif:k, 6kig:I, 6kig:S, 6kig:k
14 7y7b:I 33 33 0.5429 0.5758 0.5758 4.04e-08 7y8a:I
15 8am5:i 40 32 0.5429 0.4750 0.5938 9.80e-08 8asl:i, 8asp:i, 6hqb:I, 4l6v:I, 4l6v:i, 4l6v:9, 6nwa:I, 6nwa:i, 6nwa:R, 5oy0:I, 5oy0:i, 5oy0:h, 7umh:I, 7umh:R, 7umh:i, 6uzv:I, 6uzv:i, 6uzv:h
16 7dr0:I 30 29 0.5143 0.6000 0.6207 1.04e-07 7dr1:I, 7dr2:aI, 7dr2:bI, 7dr2:cI, 7dr2:dI
17 6vpv:I 38 32 0.6286 0.5789 0.6875 2.30e-07 6vpv:i, 6vpv:7
18 6k61:I 34 33 0.5429 0.5588 0.5758 4.40e-07 6jeo:aI, 6jeo:bI, 6jeo:cI, 6jeo:dI, 6k61:i, 6tcl:I1, 6tcl:I2, 6tcl:I, 6tcl:II, 7y3f:I
19 4fe1:I 38 32 0.5429 0.5000 0.5938 1.47e-06 7fix:I1, 7fix:I2, 7fix:I3, 1jb0:I, 6k33:aI, 6k33:bI, 6k33:cI, 6lu1:I, 7m75:I, 7m76:I, 7m78:I, 3pcq:I, 6pfy:I, 6pfy:R, 6pfy:e, 6pgk:I, 6pgk:R, 6pgk:e, 6tra:I, 6trc:I, 6trc:7, 6trc:i, 6trd:I, 6trd:7, 6trd:i, 5zf0:I1, 5zf0:I2, 5zf0:I3, 5zf0:I4, 5zf0:I5, 5zf0:I6
20 8wey:I 32 32 0.5714 0.6250 0.6250 2.17e-06 7blz:I, 5zgb:I, 5zgh:I
21 6sl5:I 39 26 0.4857 0.4359 0.6538 4.40e-06
22 6kmw:aI 38 32 0.4571 0.4211 0.5000 5.71e-05 6kmw:cI, 6kmw:bI
23 7lx0:R 42 32 0.4857 0.4048 0.5312 3.80e-04 7lx0:I, 7lx0:i, 6pnj:I, 6pnj:R, 6pnj:i
24 8jjr:i 120 26 0.4286 0.1250 0.5769 4.67e-04
25 8jze:i 119 26 0.4000 0.1176 0.5385 0.003 8jzf:i
26 6kmx:aI 41 32 0.4000 0.3415 0.4375 0.007 6kmx:cI, 6kmx:bI
27 7coy:aI 30 30 0.3429 0.4000 0.4000 0.013 7coy:bI, 7coy:cI
28 7s3d:I 42 32 0.3714 0.3095 0.4062 0.018 7s3d:i, 7s3d:R
29 7e22:A 366 20 0.2571 0.0246 0.4500 6.9
30 5vn5:C 334 19 0.2571 0.0269 0.4737 9.1 6e6i:A, 6e6i:B, 6e6i:C, 6e6i:D, 6e6i:E, 6e6i:F, 6e6i:G, 6e6i:H, 6e6i:I, 5vn5:A, 5vn5:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218