Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
MAAAAVSSAKRSLRGELKQRLMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQDEIETEEIIKDIFQRGKICFIPR
YRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDVREEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQ
HQEVKPYTLALAFKEQICLQVPVNDMKVDEVLYED

The query sequence (length=195) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3hy6:A 198 198 0.9949 0.9798 0.9798 1.31e-141 3hxt:A, 3hy3:A, 3hy4:A
2 2jcb:A 194 154 0.2308 0.2320 0.2922 1.16e-08 2jcb:B
3 1u3f:A 164 157 0.1949 0.2317 0.2420 3.04e-05 1u3f:B, 1u3g:A
4 4r7p:A 485 94 0.1077 0.0433 0.2234 3.1 4r7p:B, 4r7p:C
5 8v83:m 211 37 0.0667 0.0616 0.3514 3.9 8v84:m
6 1pz1:A 333 36 0.0667 0.0390 0.3611 4.9 1pz1:B
7 2dfj:A 267 48 0.0821 0.0599 0.3333 5.2 2dfj:B
8 1iom:A 374 51 0.0872 0.0455 0.3333 6.5 1ixe:A, 1ixe:B, 1ixe:C, 1ixe:D
9 3fe2:A 234 96 0.1231 0.1026 0.2500 6.5 3fe2:B
10 3vsz:C 482 53 0.0667 0.0270 0.2453 6.6 3vsz:A, 3vsz:B, 3vsz:E, 3vsz:F, 3vt0:A, 3vt0:B, 3vt0:C, 3vt0:E, 3vt0:F, 3vt1:B, 3vt1:C, 3vt1:E, 3vt1:F, 3vt1:A, 3vt2:A, 3vt2:B, 3vt2:C, 3vt2:D, 3vt2:E, 3vt2:F
11 6r1n:A 420 178 0.1795 0.0833 0.1966 8.6
12 4ilk:A 337 33 0.0615 0.0356 0.3636 9.1 4ilk:B
13 7sgl:D 406 28 0.0564 0.0271 0.3929 9.9 7abs:A, 7af1:A, 7afs:A, 7afu:A, 7agi:A, 7apv:A, 6tt5:AAA, 6wnl:A, 6wnl:B, 6wo0:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218