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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LYVVGRKKMMDAQYKCYDRMQQLPAYQGEGPYCNRTWDGWLCWDDTPAGVLSYQFCPDYFPDFDPSEKVTKYCDEKGVWF
KHPENNRTWSNYTMCNAFT

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7tyn:R 373 99 1.0000 0.2654 1.0000 2.34e-73 9auc:R, 8f0j:R, 8f0k:R, 8f2b:R, 6niy:R, 7tyf:R, 7tyo:R, 7tyw:R, 7tyx:R, 7tyy:R, 7tzf:R
2 6pfo:A 474 98 0.9899 0.2068 1.0000 7.64e-72 5ii0:A, 5ii0:B, 5ii0:C, 6pfo:B, 6pgq:A
3 4rwf:A 555 94 0.6263 0.1117 0.6596 2.27e-42 6v2e:A, 2xvt:C, 2xvt:F
4 6zho:A 577 96 0.6162 0.1057 0.6354 5.38e-41 8ax5:A, 8ax6:A, 8ax7:A, 6d1u:A, 6d1u:B, 6d1u:C, 3n7r:A, 3n7r:C, 3n7r:D, 3n7r:B, 3n7s:A, 3n7s:C, 3n7s:D, 3n7s:B, 7p0f:A, 7p0i:A, 4rwg:A, 4rwg:B, 4rwg:C, 5v6y:A, 5v6y:B, 5v6y:C, 5v6y:D, 6zis:A
5 7knu:R 341 96 0.5859 0.1701 0.6042 1.61e-38
6 6fj3:A 562 87 0.3131 0.0552 0.3563 6.39e-13 8d51:A, 8d52:A, 7uzo:A, 7uzp:A, 7uzp:C, 7uzp:E
7 6nbh:R 379 87 0.3131 0.0818 0.3563 4.92e-12 8flt:R, 8ha0:R, 8haf:R, 8jr9:R, 6nbf:R, 6nbi:R
8 3l2j:A 484 87 0.3030 0.0620 0.3448 2.45e-11 3c4m:A, 3c4m:B, 3h3g:A, 3l2j:B
9 7f16:R 376 72 0.2626 0.0691 0.3611 7.82e-10
10 7dur:R 371 85 0.2424 0.0647 0.2824 8.68e-09 7lll:R, 7lly:R
11 7vvo:R 302 43 0.1919 0.0629 0.4419 7.94e-08 8gw8:R
12 6whc:R 371 65 0.2323 0.0620 0.3538 1.54e-06 8jru:R, 8wg8:R
13 7lci:R 393 66 0.2020 0.0509 0.3030 1.26e-05 7c2e:R, 7duq:R, 7e14:R, 7evm:R, 7fim:R, 8jip:R, 8jir:R, 8jis:R, 7lcj:R, 7lck:R, 5nx2:A, 6orv:RP, 7s15:R, 7s1m:R, 7vbh:R, 7vbi:R, 6vcb:R, 6x19:R, 6x1a:R, 7x8r:R, 7x8s:R, 6xox:R
14 6wpw:R 398 65 0.2323 0.0578 0.3538 2.31e-05 8fu6:R, 8jiq:R, 8jit:R, 8jiu:R, 6lmk:R, 6lml:R, 7v35:R
15 6ln2:A 437 62 0.1919 0.0435 0.3065 6.43e-05 3c59:A, 3c5t:A, 3iol:A, 5otu:A, 5otu:C, 5otv:C, 5otv:A, 5otw:C, 5otw:A, 5otx:A, 5otx:C, 4zgm:A
16 5xez:B 499 84 0.2626 0.0521 0.3095 9.08e-05 5xf1:B
17 5yqz:R 558 83 0.2626 0.0466 0.3133 1.06e-04 5xez:A, 5xf1:A
18 3n96:A 473 61 0.2222 0.0465 0.3607 2.26e-04 3ehs:A, 3eht:A, 3n93:B, 3n93:A, 3n95:C, 3n95:D, 3n95:A, 3n95:B, 3n96:C, 3n96:D, 3n96:B
19 3n94:A 466 71 0.2020 0.0429 0.2817 2.76e-04
20 8e3x:R 362 68 0.2020 0.0552 0.2941 5.62e-04 6m1i:A, 6p9y:R
21 6lpb:R 331 71 0.2020 0.0604 0.2817 6.41e-04
22 8e3y:R 372 73 0.2121 0.0565 0.2877 0.002 8e3z:R, 6vn7:R
23 2xdg:A 89 39 0.1515 0.1685 0.3846 0.010 2xdg:B
24 2jnd:A 79 66 0.1919 0.2405 0.2879 0.010
25 7fin:R 380 65 0.1717 0.0447 0.2615 0.11 7dty:R, 7fiy:R, 7rbt:R, 7vab:R, 8yw4:R
26 6p8t:H 326 31 0.1313 0.0399 0.4194 0.57 6p8t:C, 6p8t:D, 6p8t:G
27 5n0c:A 1293 40 0.1313 0.0101 0.3250 0.83 1dfq:A, 1diw:A, 1dll:A, 1fv2:A, 1fv3:A, 1fv3:B, 3hmy:A, 3hn1:A, 5n0b:A, 5n0c:B, 1yxw:A, 1yyn:A, 1z7h:A
28 7vqx:R 361 46 0.1313 0.0360 0.2826 2.1 7wbj:R
29 3was:A 389 38 0.1414 0.0360 0.3684 2.4 4kmi:A, 4kmi:B, 3was:B, 3wat:A, 3wat:B, 3wau:A, 3wau:B
30 3ehu:A 441 40 0.1212 0.0272 0.3000 3.5 3ehu:B
31 1yvg:A 397 23 0.0909 0.0227 0.3913 4.8 4j1l:A
32 3dv0:E 344 23 0.0909 0.0262 0.3913 6.5 1w88:A, 1w88:C, 1w88:E, 1w88:G
33 3duf:A 365 23 0.0909 0.0247 0.3913 6.5 3duf:C, 3duf:E, 3duf:G, 3dv0:A, 3dv0:C, 3dv0:G, 3dva:A, 3dva:C, 3dva:E, 3dva:G, 1w85:A, 1w85:C, 1w85:E, 1w85:G
34 5aie:A 54 23 0.0909 0.1667 0.3913 6.6
35 7c86:A 296 47 0.1212 0.0405 0.2553 7.4 6csn:A, 6cso:A, 7e6x:A, 7e6y:A, 7e6z:A, 7e70:A, 7e71:A, 3ug9:A, 4yzi:A
36 5ogx:A 333 27 0.1111 0.0330 0.4074 9.4
37 6b03:A 896 60 0.1818 0.0201 0.3000 9.5 6b05:A, 6brs:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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