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BioLiP
>protein
LYNKYFSADRLHKAPEILFEYNKTKYDRVGVRYTEVTSKASERFFPKSRMNRAPVIEISYREGAVSTASVSLSMPEISGP
P

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7y4l:WA 139 81 1.0000 0.5827 1.0000 6.31e-55 7ezx:D5, 7ezx:D8, 7liy:A, 7y4l:cA, 7y5e:WB, 7y5e:cB, 7y7a:WA, 7y7a:cA, 7y7a:WW, 7y7a:cW
2 3vpq:A 203 64 0.2099 0.0837 0.2656 0.90 3vur:A
3 7y4l:KA 226 34 0.1728 0.0619 0.4118 1.7 7ezx:E5, 7ezx:E8, 7lix:A, 7y4l:UA, 7y5e:KB, 7y5e:UB, 7y7a:KW, 7y7a:KA, 7y7a:UA, 7y7a:UW
4 7et6:D 109 53 0.1852 0.1376 0.2830 2.9 7et6:A
5 5npl:A 181 28 0.1235 0.0552 0.3571 3.7
6 6za4:B 423 24 0.1605 0.0307 0.5417 3.7 3rv6:B, 3rv9:C
7 3veh:B 451 24 0.1605 0.0288 0.5417 3.7 2g5f:A, 2g5f:B, 3log:B, 8qc4:A, 8qc4:B, 8qn5:A, 8qn5:B, 8qn5:C, 8qn5:D, 3rv6:A, 3rv7:A, 3rv7:B, 3rv7:C, 3rv7:D, 3rv8:A, 3rv8:B, 3rv8:C, 3rv8:D, 3rv9:A, 3rv9:B, 3rv9:D, 3st6:A, 3st6:B, 3veh:A, 3veh:C, 3veh:D, 6za4:A, 6za4:C, 6za4:D, 6za5:B, 6za5:D
8 4xln:J 1367 36 0.1358 0.0080 0.3056 4.6 3aoh:D, 3aoh:N, 3aoi:D, 3aoi:N, 6asg:D, 4gzy:D, 4gzz:D, 5i2d:D, 5i2d:O, 4mq9:D, 7rdq:D, 4wqt:D, 4wqt:I, 4wqt:N, 4xlp:J, 4xlq:J, 4xlr:J, 4xls:J
9 5tjg:D 1475 36 0.1358 0.0075 0.3056 4.6
10 1ws7:A 107 65 0.2346 0.1776 0.2923 5.2 1ws7:B, 1ws7:C, 1ws7:D, 1ws8:A, 1ws8:B, 1ws8:C, 1ws8:D
11 8jkz:A 584 25 0.1481 0.0205 0.4800 5.3 8in8:B, 8jl0:A, 8k87:B, 8k87:G, 8k88:B
12 1n6j:A 93 18 0.1235 0.1075 0.5556 5.7 6byy:A, 6byy:B, 6byy:C, 6bz1:C, 6bz1:A, 6bz1:B, 1n6j:B, 1tqe:P, 1tqe:Q, 1tqe:R, 1tqe:S, 6wc2:I, 6wc2:J, 6wc2:D, 6wc2:A, 6wc2:B, 6wc5:A, 6wc5:B, 6wc5:C, 6wc5:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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