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BioLiP
>protein
LYKSNHNVVYSCKYHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDHIHILADIDPSFGVMKFIKTAK
GRSSRILRQEFNHLKTKLPTLWTNSCFISTVGGAPLNVVKQYIENQQN

The query sequence (length=128) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2a6o:A 152 128 1.0000 0.8421 1.0000 9.27e-95 2a6o:B, 6fi8:A, 6fi8:B, 6fi8:G, 6fi8:H, 2vhg:A, 2vhg:B, 2vic:A, 2vic:B, 2vih:A, 2vih:B, 2vju:A, 2vju:B, 2vjv:A, 2vjv:B
2 2f4f:A 130 124 0.3594 0.3538 0.3710 2.70e-26 2f4f:B
3 2xma:E 141 128 0.3672 0.3333 0.3672 7.16e-24 2xm3:A, 2xm3:B, 2xm3:C, 2xm3:D, 2xm3:F, 2xm3:E, 2xma:A, 2xma:B, 2xma:F, 2xo6:A, 2xo6:D, 2xqc:A, 2xqc:D
4 4fak:A 163 64 0.1641 0.1288 0.3281 1.8
5 2bw1:G 165 18 0.0703 0.0545 0.5000 2.5 2bw1:C, 2bw1:D, 2bw1:A, 2bw1:B, 2bw1:H, 2bw1:E, 2bw1:F, 2bw1:K, 2bw1:L, 2bw1:I, 2bw1:J, 1umn:K, 2ux1:A, 2ux1:B, 2ux1:C, 2ux1:D, 2ux1:E, 2ux1:F, 2ux1:G, 2ux1:H, 2ux1:I, 2ux1:J, 2ux1:K, 2ux1:L, 2v15:A, 2v15:B, 2v15:C, 2v15:D, 2v15:E, 2v15:F, 2v15:G, 2v15:H, 2v15:I, 2v15:J, 2v15:K, 2v15:L, 2xjm:A, 2xjm:B, 2xjm:C, 2xjm:D, 2xjm:E, 2xjm:F, 2xjm:G, 2xjm:H, 2xjm:I, 2xjm:J, 2xjm:K, 2xjm:L, 2xjn:A, 2xjn:C, 2xjn:D, 2xjn:E, 2xjn:F, 2xjn:G, 2xjn:H, 2xjn:I, 2xjn:J, 2xjn:K, 2xjn:L, 2xkq:A, 2xkq:B, 2xkq:C, 2xkq:D, 2xkq:E, 2xkq:F, 2xkq:G, 2xkq:H, 2xkq:I, 2xkq:J, 2xkq:K, 2xkq:L
6 8gpv:A 255 34 0.1016 0.0510 0.3824 2.8
7 6bxt:A 265 109 0.1953 0.0943 0.2294 2.9 6bxt:B
8 8qdx:C 837 49 0.1172 0.0179 0.3061 3.0 9gbv:A, 9gbv:C, 9ggq:C, 9ggq:A, 8qdx:A, 8qqi:A, 8qqi:C, 8qqs:A, 8qqs:C, 8qqu:C, 6rks:C, 6rks:A, 6rku:C, 6rku:A, 6rkv:C, 6rkv:A, 6rkw:C, 6rkw:A, 4tma:E, 2y3p:A, 2y3p:B, 7z9c:A, 7z9c:C, 7z9g:A, 7z9g:C, 7z9k:A, 7z9k:C, 7z9m:A, 7z9m:C
9 2z55:A 242 50 0.1172 0.0620 0.3000 5.8 2ei4:A, 1vgo:A, 1vgo:B, 3wqj:A, 2z55:B, 2z55:D, 2z55:E
10 2owo:A 586 73 0.1641 0.0358 0.2877 6.3 4glx:A, 5tt5:A
11 5ixo:A 596 30 0.0781 0.0168 0.3333 9.5 5ixq:A, 5ixt:A, 5iyv:A, 5iyx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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