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BioLiP
>protein
LYGRYNCKCCWFADTNLITCNDHYLCLRCHQTMLRNSELCHICWKPLPT

The query sequence (length=49) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ckm:B 49 49 1.0000 1.0000 1.0000 6.31e-32 7el9:B, 7el9:E, 7elb:B, 7elb:D, 7elc:B, 7vgq:B, 7vh1:B
2 7x6v:B 48 47 0.4286 0.4375 0.4468 6.40e-08
3 2m1s:A 99 47 0.4898 0.2424 0.5106 3.49e-06 7ckl:B, 7ela:B, 5i72:A, 5i72:B
4 7oik:A 4426 53 0.3469 0.0038 0.3208 0.29 7oim:A, 6tax:A, 6tay:A
5 1fgx:B 273 25 0.2245 0.0403 0.4400 2.3 1fr8:A, 1fr8:B, 2fyd:B, 2fyd:D, 1nf5:B, 1nf5:D, 1nhe:B, 1nhe:D, 1nkh:B, 1nkh:D, 1nwg:B, 1nwg:D, 1o23:B, 1o23:D, 1oqm:B, 1oqm:D, 1pzy:B, 1pzy:D, 1yro:B, 1yro:D
6 2agd:A 273 25 0.2245 0.0403 0.4400 2.4 2ae7:A, 2ae7:B, 2ae7:C, 2aec:A, 2aec:B, 2aec:C, 2aes:A, 2aes:B, 2aes:C, 2agd:B, 2agd:C, 2ah9:A, 2ah9:B, 2ah9:C, 3ee5:A, 3ee5:B, 3ee5:C, 4ee3:A, 4ee3:B, 4ee3:C, 4ee4:A, 4ee4:B, 4ee4:C, 4ee5:A, 4ee5:B, 4ee5:C, 4eea:A, 4eea:B, 4eea:C, 4eeg:A, 4eeg:B, 4eeg:C, 4eem:A, 4eem:B, 4eem:C, 4eeo:A, 4eeo:B, 4eeo:C, 2fya:A, 2fyb:A, 2fyc:B, 2fyc:D, 4krv:A, 4krv:B, 1o0r:A, 1o0r:B, 1tvy:A, 1tvy:B, 1tw1:A, 1tw1:B, 1tw5:A, 1tw5:B
7 6yxa:A 536 10 0.1224 0.0112 0.6000 3.1 8acu:A, 8acu:B
8 6k15:H 393 27 0.1633 0.0204 0.2963 5.8 6kw4:H, 6kw5:H, 6v8o:I, 6v92:I
9 6tda:L 596 27 0.1633 0.0134 0.2963 5.9
10 5a22:A 2002 34 0.2245 0.0055 0.3235 5.9
11 6u1x:A 2059 34 0.2245 0.0053 0.3235 5.9
12 2csy:A 81 43 0.2857 0.1728 0.3256 9.0
13 6a6u:A 432 20 0.1837 0.0208 0.4500 9.5 6a6r:A, 6a6s:A, 6a6t:A, 6a6v:A, 6a6v:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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