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BioLiP
>protein
LYFQSHMSELIVNVINGPNLGRLGRREYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNA
GGLTHTSVALRDACAELSAPLIEVHISNVHAREEFRRHSYLSPIATGVIVGLGIQGYLLALRYLAEH

The query sequence (length=147) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3n8k:M 151 150 1.0000 0.9735 0.9800 1.83e-102 4b6o:A, 4b6p:A, 4b6q:A, 4civ:A, 4ciw:A, 4cix:A, 4ciy:A, 4cky:A, 4cl0:A, 1h0r:A, 1h0s:A, 4ki7:A, 4ki7:B, 4ki7:C, 4ki7:D, 4ki7:E, 4ki7:F, 4ki7:G, 4ki7:H, 4ki7:I, 4ki7:J, 4ki7:K, 4ki7:L, 4ki7:N, 4ki7:Q, 4ki7:O, 4ki7:P, 4ki7:R, 4ki7:S, 4ki7:T, 4ki7:U, 4ki7:V, 4ki7:W, 4ki7:X, 4kij:A, 4kiu:A, 4kiu:B, 4kiu:E, 4kiu:C, 4kiu:D, 4kiu:F, 4kiu:G, 4kiu:H, 4kiu:I, 4kiu:J, 4kiu:K, 4kiu:L, 4kiu:N, 4kiu:O, 4kiu:P, 4kiu:Q, 4kiu:R, 4kiu:T, 4kiu:U, 4kiu:V, 4kiu:W, 4kiu:X, 4kiw:A, 4kiw:B, 4kiw:C, 4kiw:D, 4kiw:E, 4kiw:G, 4kiw:H, 4kiw:J, 4kiw:K, 4kiw:L, 4kiw:M, 4kiw:N, 4kiw:O, 4kiw:P, 4kiw:Q, 4kiw:R, 4kiw:S, 4kiw:T, 4kiw:U, 4kiw:V, 4kiw:W, 4kiw:X, 3n59:C, 3n59:G, 3n76:A, 3n7a:A, 3n7a:B, 3n7a:C, 3n7a:D, 3n7a:E, 3n7a:F, 3n7a:G, 3n7a:H, 3n7a:I, 3n7a:J, 3n7a:K, 3n7a:L, 3n7a:M, 3n7a:N, 3n7a:O, 3n7a:P, 3n7a:Q, 3n7a:R, 3n7a:S, 3n7a:T, 3n7a:U, 3n7a:V, 3n7a:W, 3n7a:X, 3n86:A, 3n86:L, 3n86:B, 3n86:E, 3n86:C, 3n86:D, 3n86:G, 3n86:F, 3n86:H, 3n86:J, 3n86:I, 3n86:K, 3n86:M, 3n86:X, 3n86:N, 3n86:Q, 3n86:O, 3n86:P, 3n86:S, 3n86:R, 3n86:T, 3n86:V, 3n86:U, 3n86:W, 3n87:A, 3n87:L, 3n87:B, 3n87:E, 3n87:C, 3n87:D, 3n87:G, 3n87:F, 3n87:H, 3n87:I, 3n87:J, 3n87:K, 3n87:M, 3n87:N, 3n87:O, 3n87:P, 3n87:Q, 3n87:R, 3n87:S, 3n87:T, 3n87:V, 3n87:U, 3n87:W, 3n87:X, 3n8k:A, 3n8k:B, 3n8k:C, 3n8k:D, 3n8k:E, 3n8k:F, 3n8k:G, 3n8k:H, 3n8k:I, 3n8k:J, 3n8k:K, 3n8k:L, 3n8k:N, 3n8k:O, 3n8k:P, 3n8k:R, 3n8k:S, 3n8k:T, 3n8k:U, 3n8k:V, 3n8k:W, 3n8n:A, 3n8n:B, 3n8n:C, 3n8n:D, 3n8n:E, 3n8n:F, 3n8n:G, 3n8n:I, 3n8n:J, 3n8n:K, 3n8n:L, 3n8n:T, 3n8n:U, 3n8n:V, 4v0s:A, 4v0s:B, 2xb8:A, 2y71:A, 2y76:A, 2y77:A
2 8idr:C 147 135 0.4762 0.4762 0.5185 1.29e-37 8idr:A, 8idr:B, 8idr:D, 8idu:A, 8idu:B, 8idu:C, 8idu:D, 8idu:E, 8idu:F
3 5b6p:B 145 137 0.4626 0.4690 0.4964 7.73e-35 5b6p:C, 5b6p:G, 5ydb:A, 5ydb:B, 5ydb:C, 5ydb:D
4 1v1j:A 150 136 0.4014 0.3933 0.4338 3.98e-32 2bt4:A, 2bt4:B, 2bt4:C, 2bt4:D, 2bt4:E, 2bt4:F, 2bt4:G, 2bt4:H, 2bt4:I, 2bt4:J, 2bt4:K, 2bt4:L, 2cjf:A, 2cjf:B, 2cjf:C, 2cjf:D, 2cjf:E, 2cjf:F, 2cjf:G, 2cjf:H, 2cjf:I, 2cjf:J, 2cjf:K, 2cjf:L, 1gtz:A, 1gtz:B, 1gtz:C, 1gtz:D, 1gtz:E, 1gtz:F, 1gtz:G, 1gtz:H, 1gtz:I, 1gtz:J, 1gtz:K, 1gtz:L, 1gu1:A, 1gu1:B, 1gu1:C, 1gu1:D, 1gu1:E, 1gu1:F, 1gu1:G, 1gu1:H, 1gu1:I, 1gu1:J, 1gu1:K, 1gu1:L, 1v1j:B, 1v1j:C, 1v1j:D, 1v1j:E, 1v1j:F, 1v1j:G, 1v1j:H, 1v1j:I, 1v1j:J, 1v1j:K, 1v1j:L
5 6hs9:A 145 145 0.4150 0.4207 0.4207 4.94e-29 6hsa:A
6 2c4w:A 168 143 0.3741 0.3274 0.3846 7.69e-26 4b6r:A, 4b6r:C, 4b6r:B, 4b6s:A, 4b6s:C, 4b6s:B, 2c57:A, 2c57:B, 2c57:C, 2c57:D, 2c57:E, 2c57:F, 2c57:G, 2c57:H, 2c57:I, 2c57:J, 2c57:K, 2c57:L, 1j2y:A, 2wks:A, 2wks:B, 2wks:C, 2wks:F, 2wks:D, 2wks:E, 2xb9:A, 2xb9:B, 2xd9:A, 2xd9:B, 2xd9:C, 2xda:A
7 1rpn:D 322 67 0.1293 0.0590 0.2836 0.35 1rpn:A, 1rpn:B, 1rpn:C
8 7cge:A 257 51 0.1224 0.0700 0.3529 2.2 7cge:D
9 3pdi:A 427 42 0.1088 0.0375 0.3810 2.4 3pdi:C, 3pdi:E, 3pdi:G
10 1rv3:B 466 30 0.1020 0.0322 0.5000 2.8 1cj0:A, 1ls3:A, 1ls3:B, 1ls3:C, 1ls3:D, 1rv3:A, 1rv4:A, 1rv4:B, 1rvu:A, 1rvu:B, 1rvy:A, 1rvy:B
11 1hpl:A 449 68 0.1633 0.0535 0.3529 4.4 1hpl:B
12 2yce:E 255 55 0.1156 0.0667 0.3091 5.8 1w8s:A, 1w8s:B, 1w8s:C, 1w8s:D, 1w8s:E, 1w8s:F, 1w8s:G, 1w8s:H, 1w8s:I, 1w8s:J, 2yce:A, 2yce:B, 2yce:C, 2yce:D, 2yce:F, 2yce:G, 2yce:H, 2yce:I, 2yce:J
13 8v9k:z 364 54 0.0952 0.0385 0.2593 9.8
14 2e2l:A 317 36 0.0884 0.0410 0.3611 9.9 2e2l:C, 2e2l:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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