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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LYFQGRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKII
NEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRS
PYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVE
AMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCT
KAKQKLNWKPRVAFDELVREMVHADVELMRTNPNA

The query sequence (length=355) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5in4:A 355 355 1.0000 1.0000 1.0000 0.0 6gpj:A, 6gpj:B, 6gpj:D, 6gpj:C, 6gpk:A, 6gpk:B, 6gpk:C, 6gpk:D, 6gpl:B, 6gpl:E, 6gpl:C, 6gpl:D, 5in4:B, 5in4:C, 5in4:D, 5in5:A, 5in5:B, 5in5:C, 5in5:D, 6q94:B, 6q94:A, 6q94:C, 6q94:E, 6q94:D, 6q94:F, 6q94:G, 6q94:H, 1t2a:A, 1t2a:D, 1t2a:B, 1t2a:C
2 5uzh:A 345 346 0.6592 0.6783 0.6763 2.33e-169
3 7kf3:A 362 342 0.6000 0.5884 0.6228 1.98e-159 7kf3:B, 7kf3:C, 7kf3:D
4 1n7g:B 336 347 0.5437 0.5744 0.5562 1.41e-135 1n7g:A, 1n7g:C, 1n7g:D, 1n7h:A, 1n7h:B
5 2z1m:A 338 342 0.5408 0.5680 0.5614 2.19e-134 2z1m:D, 2z95:A, 2z95:D
6 1rpn:D 322 338 0.4592 0.5062 0.4822 6.72e-106 1rpn:A, 1rpn:B, 1rpn:C
7 2pk3:A 309 339 0.2761 0.3172 0.2891 1.37e-33 2pk3:B
8 7us5:A 346 352 0.2704 0.2775 0.2727 1.30e-31 7us5:B, 7us5:C, 7us5:D
9 2hun:A 329 336 0.2451 0.2644 0.2589 6.43e-18 2hun:B
10 7yst:A 312 177 0.1662 0.1891 0.3333 6.68e-17 7ys8:A, 7ys8:B, 7ys9:A, 7ys9:B, 7ysa:A, 7ysa:B, 7ysm:A, 7ysm:B, 7yst:B, 7ysy:A, 7ysy:B, 7yt0:A, 7yt0:B
11 4zrn:A 309 328 0.2282 0.2621 0.2470 8.70e-16 4zrm:A, 4zrm:B, 4zrn:B
12 6x3b:A 300 210 0.1634 0.1933 0.2762 2.37e-15 6x3b:B, 6x3b:C, 6x3b:D
13 1orr:A 338 366 0.2394 0.2515 0.2322 4.04e-14 1orr:B, 1orr:C, 1orr:D
14 1rkx:C 351 355 0.2225 0.2251 0.2225 3.41e-13 1rkx:A, 1rkx:B, 1rkx:D
15 6bi4:C 311 335 0.2282 0.2605 0.2418 6.17e-13 6bi4:B, 6bi4:D, 6bi4:A
16 8du1:A 361 349 0.2310 0.2271 0.2350 6.85e-13 8du1:B, 8du1:C, 8du1:D
17 1bxk:B 344 348 0.2366 0.2442 0.2414 4.96e-12 1bxk:A
18 6bwl:A 313 338 0.2394 0.2716 0.2515 5.66e-12
19 1wvg:A 352 365 0.2535 0.2557 0.2466 7.18e-12 1wvg:B
20 1keu:A 361 352 0.2254 0.2216 0.2273 1.95e-11 1g1a:A, 1g1a:B, 1g1a:C, 1g1a:D, 1keu:B, 1kew:A, 1kew:B
21 8wov:B 341 349 0.2394 0.2493 0.2436 4.01e-11 8wop:A, 8wop:B, 8wov:A, 8wow:A, 8wow:B
22 3aw9:A 304 339 0.2310 0.2697 0.2419 9.14e-11 3aw9:B, 3aw9:C, 3icp:A, 3ko8:A
23 1a9y:A 338 352 0.2310 0.2426 0.2330 1.07e-10 1a9z:A, 5gy7:A, 5gy7:B, 1kvq:A, 1kvr:A, 1kvs:A, 1kvt:A, 1kvu:A, 1lrj:A, 1lrk:A, 1lrl:A, 1nah:A, 1nai:A, 1uda:A, 1udb:A, 1udc:A, 2udp:A, 2udp:B, 1xel:A
24 2pzm:A 316 271 0.2085 0.2342 0.2731 5.13e-10 2pzk:A, 2pzk:B, 2pzl:A, 2pzl:B, 2pzm:B
25 2p5u:A 311 264 0.2028 0.2315 0.2727 8.47e-10 2p5u:B, 2p5u:C, 2p5u:D, 2p5y:A
26 7xpo:A 344 356 0.2310 0.2384 0.2303 3.50e-09 7xpo:B, 7xpp:B, 7xpp:A, 7xpq:A, 7xpq:B
27 2b69:A 312 346 0.2310 0.2628 0.2370 4.52e-09 4gll:A, 4gll:B
28 8sk0:B 330 216 0.1634 0.1758 0.2685 1.41e-08 8shh:A, 8shh:B, 8sk0:A
29 1ker:B 347 359 0.2254 0.2305 0.2228 1.50e-08 1kep:A, 1kep:B, 1ker:A, 1ket:A, 1ket:B, 1oc2:A, 1oc2:B
30 6wj9:B 308 254 0.1915 0.2208 0.2677 3.40e-08 6wj9:A, 6wja:A, 6wja:B, 6wjb:A, 6wjb:B
31 1r66:A 322 345 0.2225 0.2453 0.2290 4.41e-08 1r6d:A
32 3vps:A 303 278 0.1887 0.2211 0.2410 5.46e-08 3vps:B
33 2q1w:A 300 85 0.0873 0.1033 0.3647 5.48e-08 2q1w:B, 2q1w:C
34 3ehe:A 290 241 0.1746 0.2138 0.2573 6.65e-08 3ehe:B
35 6dnt:A 310 346 0.2394 0.2742 0.2457 7.15e-08
36 2c20:A 329 351 0.2451 0.2644 0.2479 1.56e-07 2c20:B, 2c20:C, 2c20:D, 2c20:E, 2c20:F
37 6vlo:A 319 210 0.1521 0.1693 0.2571 7.41e-07 6vlo:B, 6vlo:C, 6vlo:D
38 6k0g:A 335 358 0.2394 0.2537 0.2374 1.41e-06 6k0h:A, 6k0i:A
39 4twr:A 325 234 0.1718 0.1877 0.2607 4.85e-06 4wok:A
40 6zll:A 321 208 0.1577 0.1745 0.2692 1.20e-04 6zl6:A, 6zl6:B, 6zla:A, 6zla:B, 6zla:C, 6zla:D, 6zld:A, 6zld:B, 6zlj:A, 6zlj:B, 6zlk:A, 6zlk:B, 6zlk:C, 6zlk:D, 6zll:B, 6zll:C, 6zll:D
41 1z45:A 674 174 0.1324 0.0697 0.2701 1.46e-04
42 4id9:B 328 166 0.1352 0.1463 0.2892 3.59e-04 4id9:A, 4idg:A, 4idg:B
43 1gy8:C 370 281 0.1944 0.1865 0.2456 3.89e-04 2cnb:A, 2cnb:B, 2cnb:C, 2cnb:D, 1gy8:A, 1gy8:B, 1gy8:D
44 5k4w:C 321 196 0.1408 0.1558 0.2551 4.77e-04 5k4q:A, 5k4q:B, 5k4q:C, 5k4q:D, 5k4q:E, 5k4q:F, 5k4u:A, 5k4u:C, 5k4v:A, 5k4v:C, 5k4w:A, 5k4y:A, 5k4y:B, 5k4y:C, 5k4y:D, 5k4y:E, 5k4y:F, 5k50:A, 5k50:C, 5k50:E, 5k50:G, 5k50:I, 5k50:J, 5lc1:A, 5lc1:B, 5lc1:C, 5lc1:D, 5lc1:E, 5lc1:F
45 3enk:A 340 310 0.2169 0.2265 0.2484 5.30e-04 3enk:B
46 7kn1:A 336 355 0.2085 0.2202 0.2085 6.39e-04 7kn1:B
47 7k3p:A 329 241 0.1577 0.1702 0.2324 6.41e-04 7k3p:B
48 3c1t:B 326 62 0.0676 0.0736 0.3871 7.74e-04 3bxx:A, 3bxx:B, 3bxx:C, 3bxx:D, 3bxx:E, 3bxx:F, 3c1t:A, 3c1t:C, 3c1t:D, 2c29:D, 2c29:F, 2iod:A, 2iod:B, 2iod:C, 2iod:D, 2nnl:D, 2nnl:F
49 1i3k:A 347 357 0.2028 0.2075 0.2017 7.87e-04 1ek5:A, 1ek6:A, 1ek6:B, 1hzj:A, 1hzj:B, 1i3k:B, 1i3l:A, 1i3l:B, 1i3m:A, 1i3m:B, 1i3n:A, 1i3n:B
50 6kv9:A 299 267 0.1972 0.2341 0.2622 0.002 6kvc:A
51 4lk3:B 274 347 0.2113 0.2737 0.2161 0.004 4lk3:A, 4lk3:C, 4lk3:D, 4lk3:E, 4lk3:F, 4m55:A, 4m55:B, 4m55:C, 4m55:D
52 4r1s:A 319 75 0.0704 0.0784 0.3333 0.013 4r1s:B
53 3lu1:A 336 339 0.2113 0.2232 0.2212 0.11 3lu1:B, 3lu1:C, 3lu1:D, 3ru7:A, 3ru7:B, 3ru7:C, 3ru7:D, 3ru9:A, 3ru9:B, 3ru9:C, 3ru9:D, 3rua:A, 3rua:B, 3rua:C, 3rua:D, 3ruc:A, 3ruc:B, 3ruc:C, 3ruc:D, 3rud:A, 3rud:B, 3rud:C, 3rud:D, 3rue:A, 3rue:B, 3rue:S, 3rue:b, 3ruf:A, 3ruf:B, 3ruf:S, 3ruf:b, 3ruh:A, 3ruh:B, 3ruh:C, 3ruh:D
54 5tqm:A 315 41 0.0451 0.0508 0.3902 0.13 5tqm:B
55 6nbr:A 316 71 0.0676 0.0759 0.3380 0.16 6nbr:B, 6nbr:C, 6nbr:D
56 4lis:A 364 167 0.1380 0.1346 0.2934 0.19 4lis:B, 4lis:C
57 1vl0:A 281 113 0.0817 0.1032 0.2566 0.20 1vl0:B, 1vl0:C
58 2xgt:B 433 64 0.0451 0.0370 0.2500 0.22 2xgt:A, 2xti:A, 2xti:B
59 5zji:3 221 98 0.0761 0.1222 0.2755 0.28
60 1sb8:A 341 243 0.1634 0.1701 0.2387 0.35 1sb9:A
61 8r2j:B 275 86 0.0648 0.0836 0.2674 0.41 8r2j:A
62 1y1p:A 342 37 0.0423 0.0439 0.4054 0.52 1y1p:B
63 8fem:A 327 134 0.0930 0.1009 0.2463 0.74 8fen:A
64 3ojc:A 230 81 0.0592 0.0913 0.2593 0.93 3ojc:B
65 8fet:A 334 30 0.0451 0.0479 0.5333 0.99 8fet:B, 8feu:A, 8feu:B, 8fev:A, 8fev:B, 8few:A, 8few:B
66 6vo6:D 311 24 0.0451 0.0514 0.6667 1.0 6vo6:A, 6vo6:B, 6vo6:C, 6vo8:A, 6vo8:B
67 8gjb:A 320 351 0.1972 0.2188 0.1994 1.4 8gjb:B
68 1i24:A 392 134 0.1042 0.0944 0.2761 2.2 1i2b:A, 1i2c:A, 1qrr:A
69 5dcy:A 366 39 0.0451 0.0437 0.4103 2.5 5cob:A, 5cob:B, 5cob:C, 5cob:D, 5dbf:A, 5dbf:B, 5dbg:A, 5dbg:B, 5dbi:A, 5dbi:B, 5dcu:A, 5dcu:B, 5dcy:B, 5df1:A, 5df1:B, 5emh:A
70 8htu:3 222 90 0.0648 0.1036 0.2556 3.5 8htu:7, 7ksq:3, 7kux:3, 6l35:3, 7xqp:3, 7xqp:7
71 2fbh:A 137 45 0.0423 0.1095 0.3333 4.1
72 3kbf:A 156 100 0.0789 0.1795 0.2800 4.8
73 7c1e:A 342 51 0.0479 0.0497 0.3333 4.9 7c1e:B, 7c3v:A, 5z2x:A, 5z2x:B, 8zav:A, 8zav:B, 5zec:A, 5zec:B, 5zed:A, 5zed:B
74 8fip:A 338 30 0.0423 0.0444 0.5000 5.2 8fio:A, 8fio:B, 8fip:B
75 7p24:AAA 494 69 0.0507 0.0364 0.2609 5.3
76 6gsd:A 364 38 0.0451 0.0440 0.4211 6.0 5mlh:A, 5mlm:A, 5mlr:A
77 2v6g:A 364 39 0.0451 0.0440 0.4103 7.4
78 1kc1:A 298 100 0.0620 0.0738 0.2200 7.5 1kc3:A, 1n2s:A
79 8rth:F 542 63 0.0563 0.0369 0.3175 8.8 8rth:B, 8rth:D, 8rth:L, 8rth:H, 8rth:J
80 2ggs:A 273 88 0.0761 0.0989 0.3068 8.9 2ggs:B
81 5l3z:A 280 29 0.0394 0.0500 0.4828 9.4 5l4l:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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