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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
LYFQGLEEGFLEDSRASLALRNFYMNRDFRKSEEWAQGFLFDYRSGYTEGTLGVGLDLLGKLGVRLDYARLDATAKLRLS
RSELKVGGLVPKLPTIQPNYGRLFPQVFQGALLTSGELSGLSLNLGRLTEVSSDLALFNRNRRFAGAAQADRFDLAGLDY
RIAPDWTGSYHYGELEQVYAQHFLGLKGRIGIAADSLESDLRLALSRDTGGARGGRIDNRSFSGSLTYRLRNGQAFGLGY
QRMSGDHGFPYLEGTDPYLVNFGQYNDFAEAGESSWQLRYDCDFAPLGVPGLSLMTRYFSGHGAKPKGADGSREWERDSD
LRYVLQGGALKGLGLVWRNATYRSAFSRDIDENRLYLTYELPLF

The query sequence (length=364) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4fsp:A 364 364 1.0000 1.0000 1.0000 0.0
2 3t24:A 377 378 0.5137 0.4960 0.4947 1.58e-118 3t24:B, 3t24:C
3 3szv:A 364 372 0.5192 0.5192 0.5081 8.43e-111 2y0k:A
4 4fso:A 354 358 0.4478 0.4605 0.4553 2.55e-98 4fso:B
5 3t0s:A 361 366 0.4725 0.4765 0.4699 2.98e-97 2y0h:A
6 4ft6:A 387 393 0.4835 0.4548 0.4478 1.33e-94
7 4frx:B 400 404 0.4780 0.4350 0.4307 4.09e-93 4frx:A
8 3szd:B 371 377 0.4176 0.4097 0.4032 8.39e-75 4fms:B, 4fms:A, 3szd:A
9 2y2x:B 378 383 0.4121 0.3968 0.3916 1.79e-74 2qtk:A, 2qtk:B, 3sys:A, 3sys:B, 2y2x:A
10 2odj:B 388 383 0.3901 0.3660 0.3708 6.72e-61 4foz:A, 2odj:A, 3sy7:A
11 5dl7:A 402 411 0.3846 0.3483 0.3406 5.89e-54
12 3sy9:B 372 387 0.3571 0.3495 0.3359 1.72e-49 3sy9:A, 3sy9:C, 3sy9:D
13 3syb:A 408 315 0.2637 0.2353 0.3048 8.23e-31
14 5dl8:B 391 387 0.2885 0.2685 0.2713 1.74e-29 5dl8:A
15 5dl5:A 416 417 0.3049 0.2668 0.2662 4.01e-22
16 6fv5:B 382 57 0.0467 0.0445 0.2982 1.7 7b2i:A, 6fv5:A, 7ov9:A, 7ovo:A, 7ovs:A, 7owz:A
17 1v9i:C 261 35 0.0440 0.0613 0.4571 2.0 5a25:A, 5a25:B, 4cnr:A, 4cnr:B, 4cnr:C, 4cnr:D, 4cnv:A, 4cnw:A, 4cnw:B, 4cnx:A, 5ezt:X, 6sks:A, 6skt:A, 6skv:A, 1v9e:A, 1v9e:B
18 8b6h:DD 558 95 0.0577 0.0376 0.2211 3.6 8b6h:Dd, 8bqs:DD, 8bqs:Dd, 8gym:vb, 8gym:VB, 8gzu:29, 8gzu:84, 8gzu:vb, 8gzu:VB, 7w5z:5B, 7w5z:5b
19 7arh:E 409 96 0.0632 0.0562 0.2396 4.0 7arl:E, 7mdx:B, 7v8l:E
20 4bed:B 1734 25 0.0302 0.0063 0.4400 8.0 4bed:D, 3qjo:A, 3qjo:B
21 2c20:A 329 39 0.0440 0.0486 0.4103 9.0 2c20:B, 2c20:C, 2c20:D, 2c20:E, 2c20:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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