Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
LWLGLRAVLVVAGLAVLSYVFNREEIARLAKEHSGLDYEVAFSKIIVELRKKHPGHILQDEDLQWVFVNAGGWMGSMCLL
HASLTEYVLLFGTAVDTGGHSGRYWAEISDTILSGTFRQWKEGTTKSEIFYPGDTIVHEVGEATSVQWSSGTWMVEYGRG
FIPSTLAFALADTIFSTQDFLTLFYTVKVYSKALLLEASTHLSQ

The query sequence (length=204) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8wue:A 226 215 1.0000 0.9027 0.9488 1.83e-146 7w2c:A, 7w2c:C, 7w2c:E, 7w2c:B, 7w2c:D, 7w2c:F, 7w2c:G, 7w2c:H, 7w2c:I, 7w2c:J, 7w2c:K, 7w2c:L, 7w2d:A, 7w2d:C, 7w2d:E, 7w2d:B, 7w2d:D, 7w2d:F, 7w2d:G, 7w2d:H, 7w2d:I, 7w2d:J, 7w2d:K, 7w2d:L, 7w2f:A, 7w2f:B, 7w2f:C, 7w2f:D, 7w2f:E, 7w2f:F, 7w2f:G, 7w2f:H, 7w2f:I, 7w2f:J, 7w2f:K, 7w2f:L, 7w2g:A, 7w2g:B, 7w2g:C, 7w2g:D, 7w2g:E, 7w2g:F, 7w2g:G, 7w2g:H, 7w2g:I, 7w2g:J, 7w2g:K, 7w2g:L, 7w2h:A, 7w2h:C, 7w2h:E, 7w2h:B, 7w2h:D, 7w2h:F, 7w2h:G, 7w2h:H, 7w2h:I, 7w2h:J, 7w2h:K, 7w2h:L, 7w2h:M, 7w2h:N, 7w2h:O, 7w2h:P, 7w2h:Q, 7w2h:R, 7w2h:S, 7w2h:T, 7w2h:U, 7w2h:V, 7w2h:W, 7w2h:X, 8w4b:A, 8w4c:A, 8wue:B, 8wue:C, 8wue:D, 8wue:E, 8wue:F, 8wwb:A
2 6djz:B 221 189 0.6814 0.6290 0.7354 2.24e-106 6djz:A, 6djz:C, 6dk0:A, 6dk0:B, 6dk0:C, 6dk1:A, 6dk1:B, 6dk1:C, 5hk1:A, 5hk1:B, 5hk1:C, 5hk2:A, 5hk2:B, 5hk2:C
3 1i7e:A 237 93 0.1225 0.1055 0.2688 2.2
4 5dds:A 514 43 0.0539 0.0214 0.2558 2.4 5dds:B, 5dds:C, 5dds:D, 5ddu:A, 5ddu:B, 5ddu:C, 5ddu:D, 5ddw:A, 5ddw:B, 5ddw:C, 5ddw:D, 6jc7:A, 6jc7:B, 6jc7:C, 6jc7:D, 6jc8:A, 6jc8:B, 6jc8:C, 6jc8:D, 6jc9:A, 6jc9:B, 6jc9:C, 6jc9:D, 8jt3:A, 8jt3:B, 8jt3:C, 8jt3:D
5 4wjw:B 673 20 0.0588 0.0178 0.6000 3.1
6 6tdz:C 530 86 0.1127 0.0434 0.2674 3.4 6tdu:AA, 6tdu:AB, 6tdu:AC, 6tdu:BA, 6tdu:BB, 6tdu:BC, 6tdy:A, 6tdy:B, 6tdy:C, 6tdz:B, 6tdz:A, 6te0:C, 6te0:A, 6te0:B
7 6ulw:A 1193 27 0.0588 0.0101 0.4444 3.4 6ulw:D, 6ulx:A, 6uly:A, 6uly:B
8 8djk:A 245 51 0.0882 0.0735 0.3529 4.3 8djm:A
9 3fg8:A 106 83 0.1127 0.2170 0.2771 4.3 3fg8:B, 3fg8:C, 3fg8:D, 3fg8:E, 3fg8:F
10 7kis:A 458 42 0.0637 0.0284 0.3095 4.7 7kis:B
11 1v1j:A 150 29 0.0735 0.1000 0.5172 6.9 2bt4:A, 2bt4:B, 2bt4:C, 2bt4:D, 2bt4:E, 2bt4:F, 2bt4:G, 2bt4:H, 2bt4:I, 2bt4:J, 2bt4:K, 2bt4:L, 2cjf:A, 2cjf:B, 2cjf:C, 2cjf:D, 2cjf:E, 2cjf:F, 2cjf:G, 2cjf:H, 2cjf:I, 2cjf:J, 2cjf:K, 2cjf:L, 1gtz:A, 1gtz:B, 1gtz:C, 1gtz:D, 1gtz:E, 1gtz:F, 1gtz:G, 1gtz:H, 1gtz:I, 1gtz:J, 1gtz:K, 1gtz:L, 1gu1:A, 1gu1:B, 1gu1:C, 1gu1:D, 1gu1:E, 1gu1:F, 1gu1:G, 1gu1:H, 1gu1:I, 1gu1:J, 1gu1:K, 1gu1:L, 1v1j:B, 1v1j:C, 1v1j:D, 1v1j:E, 1v1j:F, 1v1j:G, 1v1j:H, 1v1j:I, 1v1j:J, 1v1j:K, 1v1j:L
12 8i4a:A 1218 53 0.0882 0.0148 0.3396 7.3 8bwo:A, 8i4c:A, 8j3w:A, 8j3z:A, 8xol:A, 8xom:A
13 8iza:A 1246 53 0.0882 0.0144 0.3396 7.5 8iz7:A, 8iz9:A, 8xok:A
14 8bjf:A 1195 53 0.0882 0.0151 0.3396 7.6 8bwp:A, 8bwq:A, 8bwr:A, 8sx7:A, 8sx8:A, 8sxb:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218